View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_24 (Length: 260)
Name: NF16502_low_24
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 242
Target Start/End: Original strand, 4842368 - 4842597
Alignment:
| Q |
13 |
aatattgttgctagagaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttcta |
112 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||| |
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| T |
4842368 |
aatattgttgctagagaggtccatcactatcaaattatattgataagaaagaaaagtaggaatgacacttcctttcttcatgtttaggttgcaatttcta |
4842467 |
T |
|
| Q |
113 |
agaatgagggacttcaattgaaatttcggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagataaaatatatagatgctgaa |
212 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
4842468 |
agaatgagggacttcaattgaaatttaggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagatgaaatatatagatgctgaa |
4842567 |
T |
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| Q |
213 |
gattggagtgattagccagagtgataagtg |
242 |
Q |
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|||||||||||||||||| | ||||||||| |
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| T |
4842568 |
gattggagtgattagccaaattgataagtg |
4842597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 242
Target Start/End: Complemental strand, 5173157 - 5172928
Alignment:
| Q |
13 |
aatattgttgctagagaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttcta |
112 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5173157 |
aatattgttgctagagaggtccatcagtatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttcta |
5173058 |
T |
|
| Q |
113 |
agaatgagggacttcaattgaaatttcggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagataaaatatatagatgctgaa |
212 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||| ||| |||||| ||||||||||| |
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| T |
5173057 |
agaatgagggacttcaattgaaatttaggaaaccactttgttttttcagtttcaatgtgtactccagtgctgtttttcgatgaaatatgtagatgctgaa |
5172958 |
T |
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| Q |
213 |
gattggagtgattagccagagtgataagtg |
242 |
Q |
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|||||||||||||||||| | ||||||||| |
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| T |
5172957 |
gattggagtgattagccaaaatgataagtg |
5172928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 41 - 235
Target Start/End: Complemental strand, 5160213 - 5160019
Alignment:
| Q |
41 |
atcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaatttcg |
140 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
5160213 |
atcaaattgtattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagtgacttcaattgaaatttag |
5160114 |
T |
|
| Q |
141 |
gaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagataaaatatatagatgctgaagattggagtgattagccagagtg |
235 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||| || ||||||||| |||||||||| |||| |
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| T |
5160113 |
gaaaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtg |
5160019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 43 - 235
Target Start/End: Complemental strand, 5195853 - 5195661
Alignment:
| Q |
43 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaatttcgga |
142 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || ||||||||||||||||| ||| |
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| T |
5195853 |
caaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccttgtttaggttgcaatttctaacaataagtgacttcaattgaaatttagga |
5195754 |
T |
|
| Q |
143 |
aaccactttgttttttcagtttcaatgtgtactccaatactgtttttagataaaatatatagatgctgaagattggagtgattagccagagtg |
235 |
Q |
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|||||||||||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||| || ||||||||| |||||||||| |||| |
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| T |
5195753 |
aaccactttgttttttcagtttcaatgtctactccaatattgttttttgatgaaatatatagaacctcaagattggaatgattagccaaagtg |
5195661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 235
Target Start/End: Complemental strand, 5182483 - 5182267
Alignment:
| Q |
16 |
attgttgctagagaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaaga |
115 |
Q |
| |
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|||||| || |||||||||| | ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
5182483 |
attgtttctggagaggtccaagaatatcaaattatattgatatgaaagaaaagtaggaatgacacctcctttctccttgtttaggttgcaatttctaaga |
5182384 |
T |
|
| Q |
116 |
atgagggacttcaattgaaatttcggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagataaaatatatagatgctgaagat |
215 |
Q |
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||||| | ||||||||||||||| |||||||||||||| ||||||||||||||| | ||||| |||||||| | | ||||||||||||||||||||| |
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| T |
5182383 |
atgagtgtcttcaattgaaatttgggaaaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagat |
5182287 |
T |
|
| Q |
216 |
tggagtgattagccagagtg |
235 |
Q |
| |
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| ||||||||||||| |||| |
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| T |
5182286 |
ttgagtgattagccaaagtg |
5182267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 5214042 - 5213827
Alignment:
| Q |
17 |
ttgttgctagagaggtccatcagaatcaaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaa |
116 |
Q |
| |
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|||||||| || |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
5214042 |
ttgttgctggataggtccatcaatatcaaactatattgatatgaaagaaaagtaggaatgacacttcctttgtccttgtttaagttgcaatttctaagaa |
5213943 |
T |
|
| Q |
117 |
tgagggacttcaattgaaatttcggaaaccactttgttttttcagtttcaatgtgtactccaatactgtttttagataaaatatatagatgctgaagatt |
216 |
Q |
| |
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|||| | ||||||||||||||| || ||||||||||| |||||||||||||||| | | |||| || ||| ||| |||||||||||||||| ||||| |
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| T |
5213942 |
tgagtgtcttcaattgaaatttgggtaaccactttgtcttttcagtttcaatgtttgcaccaa---tgctttgtgatgaaatatatagatgctggagatt |
5213846 |
T |
|
| Q |
217 |
ggagtgattagccagagtg |
235 |
Q |
| |
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|||||||||||||| |||| |
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| T |
5213845 |
ggagtgattagccaaagtg |
5213827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 43 - 235
Target Start/End: Original strand, 4856875 - 4857064
Alignment:
| Q |
43 |
caaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttctaagaatgagggacttcaattgaaatttcgga |
142 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||||||||||| ||| |
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| T |
4856875 |
caaattatattgatatgaaagaaaagtaggaatgacacttccttcgtccatgtttaggttgcaatttctaagaatgagtgtcttcaattgaaatttggga |
4856974 |
T |
|
| Q |
143 |
aaccactttgttttttcagtttcaatgtgtactccaatactgtttttagataaaatatatagatgctgaagattggagtgattagccagagtg |
235 |
Q |
| |
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||||||||||| ||||||||||||||| | ||||| |||||||| | | |||||||||||||||||||||| ||||||||||||| |||| |
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| T |
4856975 |
aaccactttgtcttttcagtttcaatgagaactcc---actgttttccggtgaaatatatagatgctgaagatttgagtgattagccaaagtg |
4857064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 14 - 178
Target Start/End: Complemental strand, 7142419 - 7142256
Alignment:
| Q |
14 |
atattgttgctagagaggtccatcagaat--caaattatattgataagaaagaaaagtaggaatgacacttcctttgtccttgtttaggttgcaatttct |
111 |
Q |
| |
|
|||||||| || |||||||||| ||||| |||||||| |||||| |||| |||| ||||||||||| ||||||||||| ||||| ||||||||||| | |
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| T |
7142419 |
atattgtttctggagaggtcca--agaatgccaaattatgttgatatgaaaaaaaactaggaatgacatttcctttgtccatgttttggttgcaattttt |
7142322 |
T |
|
| Q |
112 |
aagaatgagggacttcaattgaaatttcggaaaccactttgttttttcagtttcaatgtgtactcca |
178 |
Q |
| |
|
|| || || | | | ||||||| | |||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
7142321 |
aa-cataagtgtatgtagttgaaatctaggaaaccactttgtattttcagtttcaacgtgtactcca |
7142256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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