View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_25 (Length: 259)
Name: NF16502_low_25
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_25 |
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| [»] scaffold0446 (1 HSPs) |
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Alignment Details
Target: scaffold0446 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold0446
Description:
Target: scaffold0446; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 10192 - 10440
Alignment:
| Q |
1 |
tctttatttatacatttattagcactagttctcgtttacaattattcctctatcaggggttgtgtcttgttggatgattttgccattttgctccattcct |
100 |
Q |
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| T |
10192 |
tctttatttatacatttattagcactagttctcgtttacaattattcctttattaggggttgtgtcttgttgggtgattttgccattttgctccattcct |
10291 |
T |
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| Q |
101 |
ttatgaattagacgacaattgaatctcatttcacgttattaatgtcctatatatttctcaaccaaccaaaccactgcttcccaatttaaatgaaaaggag |
200 |
Q |
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| T |
10292 |
ttatgaattagacgacaattgaatctcatttcacgttattaatgtcctatatatttctcaaccaaccaaaccactgcttcccaatttaaatgaaaaggag |
10391 |
T |
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| Q |
201 |
aatattgccaattgcagggtaaagatggagtttgatgtgttggtctctg |
249 |
Q |
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| T |
10392 |
aatattgccaattgcagggtaaagatggagtttgatgtgttggtctctg |
10440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 56111328 - 56111576
Alignment:
| Q |
1 |
tctttatttatacatttattagcactagttctcgtttacaattattcctctatcaggggttgtgtcttgttggatgattttgccattttgctccattcct |
100 |
Q |
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| T |
56111328 |
tctttatttatacatttattagcactagttctcgtttacaattattcctttattaggggttgtgtcttgttgggtgattttgccattttgatccattcct |
56111427 |
T |
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| Q |
101 |
ttatgaattagacgacaattgaatctcatttcacgttattaatgtcctatatatttctcaaccaaccaaaccactgcttcccaatttaaatgaaaaggag |
200 |
Q |
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| T |
56111428 |
ttatgaattagacgacaattgaatctcatttcacgttattaatgtcctatatatttctcaaccaaccaaaccactgcttcccaatttaaatgaaaaggag |
56111527 |
T |
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| Q |
201 |
aatattgccaattgcagggtaaagatggagtttgatgtgttggtctctg |
249 |
Q |
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| T |
56111528 |
aatattgccaattgcagggtaaagatggagtttgatgtgttggtctctg |
56111576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 56107263 - 56107225
Alignment:
| Q |
211 |
attgcagggtaaagatggagtttgatgtgttggtctctg |
249 |
Q |
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| T |
56107263 |
attgcagggtaaagatggagtttgatgtgttggtctctg |
56107225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 53
Target Start/End: Original strand, 1141834 - 1141883
Alignment:
| Q |
4 |
ttatttatacatttattagcactagttctcgtttacaattattcctctat |
53 |
Q |
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|||| ||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
1141834 |
ttatatatacatttattagcactagtgctcatttacaattattcctctat |
1141883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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