View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_27 (Length: 244)
Name: NF16502_low_27
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_27 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 45119334 - 45119565
Alignment:
| Q |
1 |
acagaaactatagcaaaagaaacatatcaagatagaattctagccaacaatagcaatttcattttttataggctttggaaattccactcttggcacgggt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45119334 |
acagaaactatagcaaaagaaacatatcaaaatagaattctagccaacaacagcaatttcattttttataggctttggaaattccactcttagcacgggt |
45119433 |
T |
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| Q |
101 |
gtgaatgcaatcatctttcagcccttttggctgttgtgatttgttcttcttcttctgtttatttgaaacaaaatgagtaaactccttatctgcatgacca |
200 |
Q |
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| T |
45119434 |
gtgaatgcaatcatctttcagcccttttgactgttgtgatttgttcttcttcttctgtttatttgaaacaaaaggagtaaactccgtatctgcatgacca |
45119533 |
T |
|
| Q |
201 |
tcatccacatcagtttgatcctccttgtctat |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45119534 |
tcatccacatcagtttgatcctccttgtctat |
45119565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 45348677 - 45348443
Alignment:
| Q |
1 |
acagaaactatagcaaaagaaacatatcaagatagaattctagccaacaatagcaatttcattttttataggctttggaaattccactcttggcacgggt |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45348677 |
acagaaactatagcaaaagaaacatatcaaaatagaattctagccaacaacagcaatttcattttttataggctttggaaattccactcttggcacgggt |
45348578 |
T |
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| Q |
101 |
gtgaatgcaatcatctttcagcccttttggctgttgtgatttgttcttcttc---ttctgtttatttgaaacaaaatgagtaaactccttatctgcatga |
197 |
Q |
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| T |
45348577 |
gtgaatgcaatcatctttcagcccttttgactgttgtgatttgttcttcttcttcttctgtttatttgaaacaaaaggagtaaactccttatctgcatga |
45348478 |
T |
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| Q |
198 |
ccatcatccacatcagtttgatcctccttgtctat |
232 |
Q |
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| T |
45348477 |
ccatcatccacatcagtgtgatcctccttgtctat |
45348443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 45358156 - 45357922
Alignment:
| Q |
1 |
acagaaactatagcaaaagaaacatatcaagatagaattctagccaacaatagcaatttcattttttataggctttggaaattccactcttggcacgggt |
100 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45358156 |
acagaaactatagcaaaagaaacatatcaaaatagaattctagccaacaacagcaatttcattttttataggctttggaaattccactcttggcacgggt |
45358057 |
T |
|
| Q |
101 |
gtgaatgcaatcatctttcagcccttttggctgttgtgatttgttcttcttc---ttctgtttatttgaaacaaaatgagtaaactccttatctgcatga |
197 |
Q |
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| T |
45358056 |
gtgaatgcaatcatctttcagcccttttgactgttgtgatttgttcttcttcttcttctgtttatttgaaacaaaaggagtaaactccttatctgcatga |
45357957 |
T |
|
| Q |
198 |
ccatcatccacatcagtttgatcctccttgtctat |
232 |
Q |
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| T |
45357956 |
ccatcatccacatcagtgtgatcctccttgtctat |
45357922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 54 - 181
Target Start/End: Complemental strand, 15340555 - 15340428
Alignment:
| Q |
54 |
caatttcattttttataggctttggaaattccactcttggcacgggtgtgaatgcaatcatctttcagcccttttggctgttgtgatttgttcttcttct |
153 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| | | |||||| ||||||| ||||||| |
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| T |
15340555 |
caatttcattttttataggctttggaaattccactcttggcgcgggtgtgaatgcaatcatcttgtagccctctagactgttgcaatttgttgttcttct |
15340456 |
T |
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| Q |
154 |
tctgtttatttgaaacaaaatgagtaaa |
181 |
Q |
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| T |
15340455 |
tctgtctatttgaaacaacaggagtaaa |
15340428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 107
Target Start/End: Complemental strand, 26223708 - 26223655
Alignment:
| Q |
54 |
caatttcattttttataggctttggaaattccactcttggcacgggtgtgaatg |
107 |
Q |
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| T |
26223708 |
caatttcattttttataggctttggaaattccactcttggcgcgggtgtgaatg |
26223655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 109
Target Start/End: Complemental strand, 36770251 - 36770201
Alignment:
| Q |
59 |
tcattttttataggctttggaaattccactcttggcacgggtgtgaatgca |
109 |
Q |
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|||| ||||||||||||| ||||| |||||||| ||||| ||||||||||| |
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| T |
36770251 |
tcatgttttataggcttttgaaatgccactcttagcacgagtgtgaatgca |
36770201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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