View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_29 (Length: 235)
Name: NF16502_low_29
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 174; Significance: 9e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 26453966 - 26453764
Alignment:
| Q |
17 |
catcaggttcctctaagggttttgcaattggttcctctaaggttgatgggaggaattgtgttggagattgtagaaaaggctttgcaattgaagccttaca |
116 |
Q |
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| T |
26453966 |
catcaggttcctctaagggttttgcaattggttcctctaaggttgatgggaggaattgtgttggagattgtagaaaaggctttgcaattgaagccttaca |
26453867 |
T |
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| Q |
117 |
tnnnnnnnttgctatagcaaaaaagatacaaataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatgttgatgctagt |
216 |
Q |
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| T |
26453866 |
taaaaaaattgctatagcaaaaaagatacaaataatgagatgattcatcttcattttattttgaaaattgaacttatcaatgacttatgttgatgctagt |
26453767 |
T |
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| Q |
217 |
att |
219 |
Q |
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||| |
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| T |
26453766 |
att |
26453764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 46 - 219
Target Start/End: Complemental strand, 26504193 - 26504005
Alignment:
| Q |
46 |
ggttcctctaaggttgatgggaggaattgtgttggagattgtagaaaaggctttgcaattgaagcct------------tacatnnnnnnnttgctatag |
133 |
Q |
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| T |
26504193 |
ggttcctccaaggctgatgggaggaattgtgttggagatggtagaaaaggctttgcaattgaagcatcctcagcagcattacataaaaaaattgttatag |
26504094 |
T |
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| Q |
134 |
caaaaaagatacaaataatgagatgattcatcttcattttgttttgaaaattgaac---ttatcaatggcttatgttgatgctagtatt |
219 |
Q |
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| T |
26504093 |
caaaaaagatacaaataatgagatgattcatcttcattttgttttgaaaattgaacttattatcaatggcttatgttgatgttagtatt |
26504005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 26521658 - 26521752
Alignment:
| Q |
125 |
ttgctatagcaaaaaagatacaaataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatgttgatgctagtatt |
219 |
Q |
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| T |
26521658 |
ttgctatagcaaaaaagatacatataatgagatgattcatcttcattttgttttaaaaattgaacttatcaatggcttatattgatgttagtatt |
26521752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 148 - 219
Target Start/End: Complemental strand, 26521647 - 26521576
Alignment:
| Q |
148 |
ataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatgttgatgctagtatt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
26521647 |
ataatgagatgattcatcttcattttgttttgaaaattgaacttatcaatggcttatattaatgctagtatt |
26521576 |
T |
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