View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_32 (Length: 207)
Name: NF16502_low_32
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 20328281 - 20328101
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaatcctcatctttggaaaggatgacatgtt |
110 |
Q |
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| T |
20328281 |
tagataatattgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaattctcatctttggaaaggatgacatgtt |
20328182 |
T |
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| Q |
111 |
atgatcacatttgaagttgacatcaaccaaaatattgttatatgatagccctaatacagttaaattacttaaccttctaat |
191 |
Q |
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| T |
20328181 |
atgatcatatttgaagttgacatcaaccaaaatattgttatatgatagccctaatacagttaaattacttaaccttctaat |
20328101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 11 - 191
Target Start/End: Original strand, 5424621 - 5424801
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaatcctcatctttggaaaggatgacatgtt |
110 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5424621 |
tagataatattgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaattctcatctttggaaaggatgacatgtt |
5424720 |
T |
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| Q |
111 |
atgatcacatttgaagttgacatcaaccaaaatattgttatatgatagccctaatacagttaaattacttaaccttctaat |
191 |
Q |
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| T |
5424721 |
atgatcatatttgaagttgacatcaaccaaaagattgttatatgatagccctaatacagttaaattacttaactttctaat |
5424801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 5378106 - 5377926
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaatcctcatctttggaaaggatgacatgtt |
110 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
5378106 |
tagataatattgtggattggtttttcaagaaactaggaatttgtaaaagcttacaagattccaaatctagaactctcaactttggaaaggatgacatgtt |
5378007 |
T |
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| Q |
111 |
atgatcacatttgaagttgacatcaaccaaaatattgttatatgatagccctaatacagttaaattacttaaccttctaat |
191 |
Q |
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| T |
5378006 |
atgatcatctttgaagttgacatcaatcaaaagattgttatatgatagccctaatacagttaaattacttaaccttctaat |
5377926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 11 - 186
Target Start/End: Original strand, 5347301 - 5347476
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaatcctcatctttggaaaggatgacatgtt |
110 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||||||| |
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| T |
5347301 |
tagataatattgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattgcaaatctagaactctcaactttggaaagcatgacatgtt |
5347400 |
T |
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| Q |
111 |
atgatcacatttgaagttgacatcaaccaaaatattgttatatgatagccctaatacagttaaattacttaacctt |
186 |
Q |
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| T |
5347401 |
atgatcatgtttgaagttgacatcaatcaaaagattgttatatgatagccctaatatagttaaattagttaacctt |
5347476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 191
Target Start/End: Complemental strand, 5400781 - 5400601
Alignment:
| Q |
11 |
tagataatactgtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaatcctcatctttggaaaggatgacatgtt |
110 |
Q |
| |
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||||||||| |||||| |||||| ||||||||||||||| |||||||||||| | || |||||| || || |||| ||||||||||||||||||||| |
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| T |
5400781 |
tagataatattgtggactggtttctcaagaaactaggaaattgtaacagcttgtaggaatccaaacctggacctctcaactttggaaaggatgacatgtt |
5400682 |
T |
|
| Q |
111 |
atgatcacatttgaagttgacatcaaccaaaatattgttatatgatagccctaatacagttaaattacttaaccttctaat |
191 |
Q |
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||||||| || |||||||||||||| |||| ||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
5400681 |
atgatcatcttcgaagttgacatcaatgaaaagattgttatatgatagccctaagatagttaaattacttaaccttctaat |
5400601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 22 - 191
Target Start/End: Complemental strand, 5353749 - 5353580
Alignment:
| Q |
22 |
gtggattggtttttcaagaaactaggaatttgtaacagcttacaagattccaaatctagaatcctcatctttggaaaggatgacatgttatgatcacatt |
121 |
Q |
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||||| |||||| ||||||||||||| |||| | |||||| ||||| ||||| |||||| |||||||| ||||||| ||| || ||||||| || |
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| T |
5353749 |
gtggactggtttctcaagaaactagggatttctctcagcttgcaagaatccaacattagaattctcatcttaggaaagggcaacaagtcatgatcaagtt |
5353650 |
T |
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| Q |
122 |
tgaagttgacatcaaccaaaatattgttatatgatagccctaatacagttaaattacttaaccttctaat |
191 |
Q |
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||| |||||||||||| ||| ||||||| ||| ||||||| || ||||||||| |||||||||||||| |
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| T |
5353649 |
tgatgttgacatcaacataaaggttgttatgtgagagccctagtatagttaaatttcttaaccttctaat |
5353580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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