View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_5 (Length: 461)
Name: NF16502_low_5
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 447; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Original strand, 2685874 - 2686324
Alignment:
| Q |
1 |
tacaccactaaacctttcaccattccatggtccacttcgatatattatgttatcatcattccgtaggaaaatctctggtaaaccatgataatcaattttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685874 |
tacaccactaaacctttcaccattccatggtccacttcgatatattatgttatcatcattccgtaggaaaatctctggtaaaccatgataatcaattttg |
2685973 |
T |
|
| Q |
101 |
aatgaataatgacctgttgaaggatcttcaccagtgttcttccatgatgttaagtgtttttctgtgtttttgtcgaagttccaaccgatattcatggatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2685974 |
aatgaataatgacctgttgaaggatcttcaccagtgttcttccatgatgttaagtgtttttctgtgtttttgtcgaagttccaaccgatattcatggatg |
2686073 |
T |
|
| Q |
201 |
gtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcattcacgtttgtttctcttagaactaaatttccattatcgaaaag |
300 |
Q |
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| T |
2686074 |
gtaacaaagtatctgttggataatcaaagctttgccatagatattttgtcggatcattcacgtttgtttctcttagaactaaatttccattatcgaaaag |
2686173 |
T |
|
| Q |
301 |
ctgaagaacaagtgggttggtagcttttgtttgattcgaagaccatatgaggttgttgtctgaatctgatgatgaattgagaagtactatgtttccattg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2686174 |
ctgaagaacaagtgggttggtagcttttgtttgattggaagaccatatgaggttgttgtctgaatctgatgatgaattgagaagtactatgtttccattg |
2686273 |
T |
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| Q |
401 |
tcaccgattttgaggtgactattggttgaattttgaagagggttgtctctg |
451 |
Q |
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| T |
2686274 |
tcaccgattttgaggtgactattggttgaattttgaagagggttgtctctg |
2686324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 2669967 - 2669927
Alignment:
| Q |
199 |
tggtaacaaagtatctgttggataatcaaagctttgccata |
239 |
Q |
| |
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| T |
2669967 |
tggtaacaaagtatctgttggatgatcaaaactctgccata |
2669927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 140 - 258
Target Start/End: Complemental strand, 36361060 - 36360942
Alignment:
| Q |
140 |
ttccatgatgttaagtgtttttctgtgtttttgtcgaagttccaaccgatattcatggatggtaacaaagtatctgttggataatcaaagctttgccata |
239 |
Q |
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|||||||| ||| |||| |||||||||| |||||||||||||||| | ||||| ||||||||||||||||| || |||||||| |||||||||| |
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| T |
36361060 |
ttccatgaatttatgtgtgtttctgtgttcgtgtcgaagttccaaccaagtttcataccaggtaacaaagtatctgtagggtaatcaaaactttgccata |
36360961 |
T |
|
| Q |
240 |
gatattttgtcggatcatt |
258 |
Q |
| |
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|| | ||||| |||||||| |
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| T |
36360960 |
gaaaatttgttggatcatt |
36360942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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