View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_6 (Length: 446)
Name: NF16502_low_6
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 149 - 435
Target Start/End: Original strand, 27112965 - 27113251
Alignment:
| Q |
149 |
ttggttagttggttattctgcattgatgggtccaattggagggattgttctagtggattattatcttgtacaaaaaatgaagttgagggtaagtgattta |
248 |
Q |
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| T |
27112965 |
ttggttagttggttattctgcattgatgggtccaattggagggattgttctagtggattattatcttgtacaaaaaatgaagttgagggtaagtgattta |
27113064 |
T |
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| Q |
249 |
tacacaaggagtcctttaggtgcatactattatacaaaggggtttaatgtagcagcaattgtggctttagttgttggaattttacctgttgttcctggtt |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27113065 |
tacacaaggagtcctttaggtgcatactattatacaaaggggtttaatgtagcagcaattgtggctttagttgttggaattttacctgttgttcctggtt |
27113164 |
T |
|
| Q |
349 |
tcttgcagaaagttggaattttaagttcaattcctaatgcttttgttgtggtatacaacaatgcttggtttattagtttcatttcag |
435 |
Q |
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| T |
27113165 |
tcttgcagaaagttggaattttaagttcaattcctaatgcttttgttgtggtatacaacaatgcttggtttattagtttcttttcag |
27113251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 144; Significance: 1e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 6 - 153
Target Start/End: Original strand, 29677622 - 29677769
Alignment:
| Q |
6 |
ccaaagtatctgggtgcttgtaagcttgaccaggtagtttttccaatctaacatacattattcttttagtttattgcaagttgtgctacatagtttagac |
105 |
Q |
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| T |
29677622 |
ccaaagtatctgggtgcttgtaagcttgaccaggtagtttttccaatctaacatacattattcttttagtttattgcaagttgtgctacatggtttagac |
29677721 |
T |
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| Q |
106 |
attttcattgtagttaattttgagtttcctttgttttagttgattggt |
153 |
Q |
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| T |
29677722 |
attttcattgtagttaattttgagtttcctttgttttagttgattggt |
29677769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 28126048 - 28126194
Alignment:
| Q |
7 |
caaagtatctgggtgcttgtaagcttgaccaggtagtttttccaatctaacatacattattcttttagtttattgcaagttgtgctacatagtttagaca |
106 |
Q |
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| T |
28126048 |
caaagtatccgggtgctcttaagcttgagcaggtagttattccaatctaacatacattattcttttagtttattgcaagttgtgctacacagtttagata |
28126147 |
T |
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| Q |
107 |
ttttcattgtagttaattttgagtttcctttgttttagttgattggt |
153 |
Q |
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| T |
28126148 |
ttttcattgtagttaattttgactttcctttgttttagttgattggt |
28126194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 149 - 435
Target Start/End: Complemental strand, 41610875 - 41610589
Alignment:
| Q |
149 |
ttggttagttggttattctgcattgatgggtccaattggagggattgttctagtggattattatcttgtacaaaaaatgaagttgagggtaagtgattta |
248 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| | |||| || || || | | ||||| |
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| T |
41610875 |
ttggttagttggttattctgcattgatgggtccaattggaggaattattctagtggattattatcttgtgaagaaaactaaattaagcattggagatttg |
41610776 |
T |
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| Q |
249 |
tacacaaggagtcctttaggtgcatactattatacaaaggggtttaatgtagcagcaattgtggctttagttgttggaattttacctgttgttcctggtt |
348 |
Q |
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|| |||| | || || ||||| |||||||| || ||||| |||||||| ||||||||||||||| | ||| ||||||| |||||||| ||||||||| |
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| T |
41610775 |
tattcaagaaatcattatggtgcttactattacactaagggatttaatgtggcagcaattgtggctcttgtttttggaatgttacctgtgattcctggtt |
41610676 |
T |
|
| Q |
349 |
tcttgcagaaagttggaattttaagttcaattcctaatgcttttgttgtggtatacaacaatgcttggtttattagtttcatttcag |
435 |
Q |
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| ||| | |||||||||| |||| ||| || | | |||||||||| || || || |||||||||||| |||| ||| |||||| |
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| T |
41610675 |
tattgaataaagttggaacgttaaaatcagtttcagaaacttttgttgttgtctataataatgcttggtttgttagcttcttttcag |
41610589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 147
Target Start/End: Complemental strand, 19656942 - 19656903
Alignment:
| Q |
108 |
tttcattgtagttaattttgagtttcctttgttttagttg |
147 |
Q |
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||||||| ||||| |||||||||||||||||||||||||| |
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| T |
19656942 |
tttcattatagttgattttgagtttcctttgttttagttg |
19656903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 33838834 - 33838802
Alignment:
| Q |
116 |
tagttaattttgagtttcctttgttttagttga |
148 |
Q |
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| T |
33838834 |
tagttaattttgagtttcctttgttgtagttga |
33838802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 33842784 - 33842752
Alignment:
| Q |
116 |
tagttaattttgagtttcctttgttttagttga |
148 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |
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| T |
33842784 |
tagttaattttgagtttcctttgttgtagttga |
33842752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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