View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16502_low_9 (Length: 388)
Name: NF16502_low_9
Description: NF16502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16502_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 372
Target Start/End: Original strand, 6184813 - 6185172
Alignment:
| Q |
13 |
aatatcctcacctttgaattgaagagttaacaaaattactatttggtacaaagcttgtgacacaagattcctccacataatgttagtaataagaggcttt |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6184813 |
aatatcctcacctttgaattgaagagttaacaaaattattatttggtacaaagcttgtgacacaagattcctccacataatgttagtaataagaggcttt |
6184912 |
T |
|
| Q |
113 |
gttctaccaactggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6184913 |
gttctaccaactggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataatcaaattcacccataata |
6185012 |
T |
|
| Q |
213 |
attgaactgctgttaatggtacttcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgttagttgaaattgaatgaattt |
312 |
Q |
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||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6185013 |
attgaactgctgttaatggtacttcaccggctgaaaccgccgcaacgaaattgataacaagggctgccacattcactgttagttgaaattgaatgaattt |
6185112 |
T |
|
| Q |
313 |
ttgaatgttgttgtaaacacatcttccccagtttaaaactgttactatagatgcaaaatt |
372 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
6185113 |
ttgaatgttgttgtaaacacatcttccccagtttaacactgttacgatagatgcaaaatt |
6185172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 372
Target Start/End: Original strand, 4235695 - 4236048
Alignment:
| Q |
19 |
ctcacctttgaattgaagagttaacaaaattactatttggtacaaagcttgtgacacaagattcctccacataatgttagtaataagaggctttgttcta |
118 |
Q |
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| T |
4235695 |
ctcacctttaaactgaagagttaataaaattactatttggtacaaagcttgtgacaaaagattcctccacataatgttagttataagaggctttgttcta |
4235794 |
T |
|
| Q |
119 |
ccaactggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataataattgaa |
218 |
Q |
| |
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||||| |||| || ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4235795 |
ccaacaggttctttatccattaaatccttagtaggtttttcagttgcaagagccaatgcacctaatgtatccataatcaaattcacccataataattgaa |
4235894 |
T |
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| Q |
219 |
ctgctgttaatggtacttcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaat |
318 |
Q |
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|||||||||| || |||||||| ||||||||||| || || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
4235895 |
ctgctgttaacggaacttcgcctgctgaaaccgccgcgacaaaatttataacaagtgctgccacattcactgttaattgaaattgaatgaatttttgaat |
4235994 |
T |
|
| Q |
319 |
gttgttgtaaacacatcttccccagtttaaaactgttactatagatgcaaaatt |
372 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||| |||||||||||||| |
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|
| T |
4235995 |
gttgttgtaaacacatcttccccaatttataactgttacaatagatgcaaaatt |
4236048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 20 - 232
Target Start/End: Complemental strand, 30441611 - 30441398
Alignment:
| Q |
20 |
tcacctttgaattgaagagttaacaaaattactatttggtacaaagcttgtgacacaagattcctccacataatgttagtaataagaggctttgttctac |
119 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| |||||| ||||| |||||||||| |||||||||| || ||||| | ||||||||||||||| |||||| |
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| T |
30441611 |
tcacctttgaattgaaaagtcaacaaaattgatatttgatacaaggcttgtgacataagattcctctacgtaatgcttgtaataagaggctttattctac |
30441512 |
T |
|
| Q |
120 |
caac-tggtttttcatccattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataataattgaa |
218 |
Q |
| |
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|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
30441511 |
caacaattttttttatccattagttccttagtaggtttttcagttgcaagagccaaagcatctaatgtatccataatcaaattcacccataataattgaa |
30441412 |
T |
|
| Q |
219 |
ctgctgttaatggt |
232 |
Q |
| |
|
||| | |||||||| |
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| T |
30441411 |
ctgatattaatggt |
30441398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 19592829 - 19592931
Alignment:
| Q |
261 |
aattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatcttccccagtttaaaactgttactat |
360 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |
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| T |
19592829 |
aattgataacaagtgctgccacattcact---------aattgaatgaatttttgaatgttgttgtaaacacatcttccccaatttaaaattgttactat |
19592919 |
T |
|
| Q |
361 |
agatgcaaaatt |
372 |
Q |
| |
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|||||||||||| |
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| T |
19592920 |
agatgcaaaatt |
19592931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 136 - 351
Target Start/End: Original strand, 38356756 - 38356971
Alignment:
| Q |
136 |
cattaattccttagtaggtttttcagttgcaagagccaaagcacctaatgtatccataattaaattcacccataataattgaactgctgttaatggtact |
235 |
Q |
| |
|
|||||| ||||| ||||| |||| ||||| || ||||||||||||| |||||||||||| | ||||||||| | | |||||||| |||||| || || |
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| T |
38356756 |
cattaactcctttgtaggcctttctgttgctagtgccaaagcacctagtgtatccataatgagattcacccaaagaagttgaactgttgttaagggaaca |
38356855 |
T |
|
| Q |
236 |
tcgccggctgaaaccgcggctacgaaattgataacaagtgctgccacattcactgttagttgaaattgaatgaatttttgaatgttgttgtaaacacatc |
335 |
Q |
| |
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|| || | ||||| || || | || || || ||||||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||||||||||| |
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| T |
38356856 |
tcaccagaagaaactgctgcaataaagtttatcacaagtgctgcaacattcactgttagttgaaactgaataaatttctggatgttgttgtaaacacatc |
38356955 |
T |
|
| Q |
336 |
ttccccagtttaaaac |
351 |
Q |
| |
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||||||| ||||||| |
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| T |
38356956 |
ttccccaccttaaaac |
38356971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 19592786 - 19592824
Alignment:
| Q |
199 |
attcacccataataattgaactgctgttaatggtacttc |
237 |
Q |
| |
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||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
19592786 |
attcacccataataattgaactgttattaatggtacttc |
19592824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 20 - 70
Target Start/End: Complemental strand, 29475802 - 29475752
Alignment:
| Q |
20 |
tcacctttgaattgaagagttaacaaaattactatttggtacaaagcttgt |
70 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||| ||||||||||| |
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| T |
29475802 |
tcacctttaaattgaagagttaacaaaattactatttggaacaaagcttgt |
29475752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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