View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16503_high_2 (Length: 618)

Name: NF16503_high_2
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16503_high_2
NF16503_high_2
[»] chr3 (2 HSPs)
chr3 (11-585)||(9276774-9277348)
chr3 (377-409)||(25204151-25204183)
[»] chr8 (4 HSPs)
chr8 (109-233)||(13749570-13749694)
chr8 (375-411)||(34489299-34489335)
chr8 (132-234)||(13630825-13630927)
chr8 (132-234)||(13731237-13731339)
[»] chr4 (2 HSPs)
chr4 (377-411)||(22016068-22016102)
chr4 (380-416)||(4790780-4790816)
[»] chr1 (3 HSPs)
chr1 (377-412)||(47126338-47126373)
chr1 (390-422)||(10212573-10212605)
chr1 (385-425)||(30035255-30035295)
[»] chr6 (2 HSPs)
chr6 (382-422)||(22993372-22993412)
chr6 (382-422)||(23794986-23795026)


Alignment Details
Target: chr3 (Bit Score: 471; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 11 - 585
Target Start/End: Complemental strand, 9277348 - 9276774
Alignment:
Q  11 gataaatatctcaatttaacaaaagcttatattcaatgtagtttaagcaatgaagtaataagatattgaatatagtacttatgatagtaaagatacatac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9277348 gataaatatctcaatttaacaaaagcttatattcaatgtagtttaagcaatgaagtaataagatattgaatatagtacttatgatagtaaagatacatac 9277249  T
Q  111 atattttaaacccattgcacctaatagaggtttagctgcaaatataagggttgcagcttgaataaggccaaggactgtgccgaaaagtaatgctgtagat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||    
T  9277248 atattttaaacccattgcacctaatagaggtttagctgcaaatataagggttgcagcttgaataaggccaagaactgtgccaaaaagtaatgctgttgat 9277149  T
Q  211 gctgaagcaatgtgccttttcttccttataggttttgacccactcttgttaccactgttagtaacaatagaagacttgcttatatttgaatttgcatctg 310  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  9277148 gctgaagcaatgtgcctcttcttccttataggttttgactcactcttgttactactattagtaacaatagaagacttgcttatatttgaatttgcatctg 9277049  T
Q  311 ataaggaaatttagaatgttagaacaaccaaacatgcatgaaatgcactaatttccctctcatatcctatgtagcaccgacactttagattgaaggtgtg 410  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||| ||||||| ||||||||||  ||    
T  9277048 ataagaaaatttagaatgttagaacaaccaaacatgcatgaaatacactcatttccctcttatatcgtatgtagcactgacacttcagattgaaggcatg 9276949  T
Q  411 ttcggtatccaataccgaaatgacactgacacacatggttatattcaattacaccattttatgacattagtattagtgtctgtgtcggtgcttcatagct 510  Q
    ||| ||||| |||||| |||||||||| |||||  |||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||||    
T  9276948 ttcagtatcaaatacctaaatgacactaacacatgtggttatattcaattataccattttctgacattagtatcagtgtctgtgtcggtgcttcatagct 9276849  T
Q  511 catatcatcaaaccagcaacttcacaccaaacatggaaaaagaaagatagggagaaagtaccatctccatttttc 585  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  9276848 catatcatcaaaccagcaacttcacaccaaacatggaaaaagaaagatagagagaaagtaccatctccatttttc 9276774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 25204151 - 25204183
Alignment:
Q  377 ctatgtagcaccgacactttagattgaaggtgt 409  Q
    |||||||||||||||||||||||||||| ||||    
T  25204151 ctatgtagcaccgacactttagattgaatgtgt 25204183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 13749694 - 13749570
Alignment:
Q  109 acatattttaaacccattgcacctaatagaggtttagctgcaaatataagggttgcagcttgaataaggccaaggactgtgccgaaaagtaatgctgtag 208  Q
    |||| ||||| |||||| ||| |||||||| |||||||| ||||||||||  ||| || |||||| |||||||| | |||||||||||| | |||||| |    
T  13749694 acatgttttatacccatggcagctaatagaagtttagctccaaatataagtattgtagtttgaattaggccaagcattgtgccgaaaaggagtgctgttg 13749595  T
Q  209 atgctgaagcaatgtgccttttctt 233  Q
    |||||||||||||||| || |||||    
T  13749594 atgctgaagcaatgtgtctcttctt 13749570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 375 - 411
Target Start/End: Complemental strand, 34489335 - 34489299
Alignment:
Q  375 tcctatgtagcaccgacactttagattgaaggtgtgt 411  Q
    |||| ||||||||||||||||||||||||||||||||    
T  34489335 tcctttgtagcaccgacactttagattgaaggtgtgt 34489299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 13630927 - 13630825
Alignment:
Q  132 taatagaggtttagctgcaaatataagggttgcagcttgaataaggccaaggactgtgccgaaaagtaatgctgtagatgctgaagcaatgtgccttttc 231  Q
    |||||||||||||||| |||||||||||  || |||||| |  || ||||| | || ||| || |||| |||||| ||||| ||||||||||| || |||    
T  13630927 taatagaggtttagctccaaatataaggactgaagcttgtaggagaccaagaattgagccaaagagtagtgctgttgatgcagaagcaatgtgtctcttc 13630828  T
Q  232 ttc 234  Q
    |||    
T  13630827 ttc 13630825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 13731339 - 13731237
Alignment:
Q  132 taatagaggtttagctgcaaatataagggttgcagcttgaataaggccaaggactgtgccgaaaagtaatgctgtagatgctgaagcaatgtgccttttc 231  Q
    |||||||||||||||| |||||||||||  || |||||| |  || ||||| | || ||| || |||| |||||| ||||| ||||||||||| || |||    
T  13731339 taatagaggtttagctccaaatataaggactgaagcttgtaggagaccaagaattgagccaaagagtagtgctgttgatgcagaagcaatgtgtctcttc 13731240  T
Q  232 ttc 234  Q
    |||    
T  13731239 ttc 13731237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 22016102 - 22016068
Alignment:
Q  377 ctatgtagcaccgacactttagattgaaggtgtgt 411  Q
    |||||||||||||||||||||||||||||||||||    
T  22016102 ctatgtagcaccgacactttagattgaaggtgtgt 22016068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 380 - 416
Target Start/End: Complemental strand, 4790816 - 4790780
Alignment:
Q  380 tgtagcaccgacactttagattgaaggtgtgttcggt 416  Q
    ||||||||||||||||  |||||||||||||||||||    
T  4790816 tgtagcaccgacacttctgattgaaggtgtgttcggt 4790780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 377 - 412
Target Start/End: Complemental strand, 47126373 - 47126338
Alignment:
Q  377 ctatgtagcaccgacactttagattgaaggtgtgtt 412  Q
    ||||||| ||||||||||||||||||||||||||||    
T  47126373 ctatgtatcaccgacactttagattgaaggtgtgtt 47126338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 10212573 - 10212605
Alignment:
Q  390 acactttagattgaaggtgtgttcggtatccaa 422  Q
    ||||||||||| |||||||||||||||||||||    
T  10212573 acactttagatggaaggtgtgttcggtatccaa 10212605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 385 - 425
Target Start/End: Original strand, 30035255 - 30035295
Alignment:
Q  385 caccgacactttagattgaaggtgtgttcggtatccaatac 425  Q
    |||||||||||| ||||||| ||||||||||| ||||||||    
T  30035255 caccgacacttttgattgaatgtgtgttcggtgtccaatac 30035295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 422
Target Start/End: Original strand, 22993372 - 22993412
Alignment:
Q  382 tagcaccgacactttagattgaaggtgtgttcggtatccaa 422  Q
    |||||||||||||| | |||||||||||||| |||||||||    
T  22993372 tagcaccgacacttgaaattgaaggtgtgtttggtatccaa 22993412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 382 - 422
Target Start/End: Complemental strand, 23795026 - 23794986
Alignment:
Q  382 tagcaccgacactttagattgaaggtgtgttcggtatccaa 422  Q
    |||||||||||||| | |||||||||||||| |||||||||    
T  23795026 tagcaccgacacttgaaattgaaggtgtgtttggtatccaa 23794986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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