View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16503_low_10 (Length: 461)

Name: NF16503_low_10
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16503_low_10
NF16503_low_10
[»] chr3 (3 HSPs)
chr3 (11-406)||(9276953-9277348)
chr3 (377-422)||(26643224-26643269)
chr3 (377-409)||(25204151-25204183)
[»] chr8 (4 HSPs)
chr8 (375-461)||(34489249-34489335)
chr8 (109-233)||(13749570-13749694)
chr8 (132-234)||(13630825-13630927)
chr8 (132-234)||(13731237-13731339)
[»] chr6 (3 HSPs)
chr6 (389-425)||(30850822-30850858)
chr6 (379-426)||(14243665-14243712)
chr6 (380-418)||(4323827-4323865)
[»] chr4 (1 HSPs)
chr4 (377-412)||(22016067-22016102)
[»] chr5 (3 HSPs)
chr5 (377-419)||(35053683-35053725)
chr5 (376-418)||(35069999-35070041)
chr5 (384-425)||(41016447-41016488)
[»] chr2 (2 HSPs)
chr2 (378-424)||(32541218-32541264)
chr2 (376-424)||(41047948-41047996)
[»] chr1 (2 HSPs)
chr1 (377-411)||(47126339-47126373)
chr1 (376-428)||(45551304-45551356)


Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 11 - 406
Target Start/End: Complemental strand, 9277348 - 9276953
Alignment:
Q  11 gataaatatctcaatttaacaaaagcttatattcaatgtagtttaagcaatgaagtaataagatattgaatatagtacttatgatagtaaagatacatac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9277348 gataaatatctcaatttaacaaaagcttatattcaatgtagtttaagcaatgaagtaataagatattgaatatagtacttatgatagtaaagatacatac 9277249  T
Q  111 atattttaaacccattgcacctaatagaggtttagctgcaaatataagggttgcagcttgaataaggccaaggactgtgccgaaaagtaatgctgtagat 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||    
T  9277248 atattttaaacccattgcacctaatagaggtttagctgcaaatataagggttgcagcttgaataaggccaagaactgtgccaaaaagtaatgctgttgat 9277149  T
Q  211 gctgaagcaatgtgccttttcttccttataggttttgacccactcttgttaccactgttagtaacaatagaagacttgcttatatttgaatttgcatctg 310  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  9277148 gctgaagcaatgtgcctcttcttccttataggttttgactcactcttgttactactattagtaacaatagaagacttgcttatatttgaatttgcatctg 9277049  T
Q  311 ataaggaaatttagaatgttagaacaaccaaacatgcatgaaatgcactaatttccctctcatatcctatgtagcaccgacactttagattgaagg 406  Q
    ||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||| |||||||||| ||||||| ||||||||||    
T  9277048 ataagaaaatttagaatgttagaacaaccaaacatgcatgaaatacactcatttccctcttatatcgtatgtagcactgacacttcagattgaagg 9276953  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 422
Target Start/End: Original strand, 26643224 - 26643269
Alignment:
Q  377 ctatgtagcaccgacactttagattgaaggtgtgtctcgtgtctga 422  Q
    ||||||||||||||||||| ||||||||||| ||||  ||||||||    
T  26643224 ctatgtagcaccgacacttcagattgaaggtttgtccggtgtctga 26643269  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 377 - 409
Target Start/End: Original strand, 25204151 - 25204183
Alignment:
Q  377 ctatgtagcaccgacactttagattgaaggtgt 409  Q
    |||||||||||||||||||||||||||| ||||    
T  25204151 ctatgtagcaccgacactttagattgaatgtgt 25204183  T

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Target: chr8 (Bit Score: 83; Significance: 4e-39; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 375 - 461
Target Start/End: Complemental strand, 34489335 - 34489249
Alignment:
Q  375 tcctatgtagcaccgacactttagattgaaggtgtgtctcgtgtctgacacagattattgtccaacaatataattacattcaattat 461  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34489335 tcctttgtagcaccgacactttagattgaaggtgtgtctcgtgtctgacacagattattgtccaacaatataattacattcaattat 34489249  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 109 - 233
Target Start/End: Complemental strand, 13749694 - 13749570
Alignment:
Q  109 acatattttaaacccattgcacctaatagaggtttagctgcaaatataagggttgcagcttgaataaggccaaggactgtgccgaaaagtaatgctgtag 208  Q
    |||| ||||| |||||| ||| |||||||| |||||||| ||||||||||  ||| || |||||| |||||||| | |||||||||||| | |||||| |    
T  13749694 acatgttttatacccatggcagctaatagaagtttagctccaaatataagtattgtagtttgaattaggccaagcattgtgccgaaaaggagtgctgttg 13749595  T
Q  209 atgctgaagcaatgtgccttttctt 233  Q
    |||||||||||||||| || |||||    
T  13749594 atgctgaagcaatgtgtctcttctt 13749570  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 13630927 - 13630825
Alignment:
Q  132 taatagaggtttagctgcaaatataagggttgcagcttgaataaggccaaggactgtgccgaaaagtaatgctgtagatgctgaagcaatgtgccttttc 231  Q
    |||||||||||||||| |||||||||||  || |||||| |  || ||||| | || ||| || |||| |||||| ||||| ||||||||||| || |||    
T  13630927 taatagaggtttagctccaaatataaggactgaagcttgtaggagaccaagaattgagccaaagagtagtgctgttgatgcagaagcaatgtgtctcttc 13630828  T
Q  232 ttc 234  Q
    |||    
T  13630827 ttc 13630825  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 132 - 234
Target Start/End: Complemental strand, 13731339 - 13731237
Alignment:
Q  132 taatagaggtttagctgcaaatataagggttgcagcttgaataaggccaaggactgtgccgaaaagtaatgctgtagatgctgaagcaatgtgccttttc 231  Q
    |||||||||||||||| |||||||||||  || |||||| |  || ||||| | || ||| || |||| |||||| ||||| ||||||||||| || |||    
T  13731339 taatagaggtttagctccaaatataaggactgaagcttgtaggagaccaagaattgagccaaagagtagtgctgttgatgcagaagcaatgtgtctcttc 13731240  T
Q  232 ttc 234  Q
    |||    
T  13731239 ttc 13731237  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 389 - 425
Target Start/End: Original strand, 30850822 - 30850858
Alignment:
Q  389 gacactttagattgaaggtgtgtctcgtgtctgacac 425  Q
    |||||||||||||||||||||||||||||||||||||    
T  30850822 gacactttagattgaaggtgtgtctcgtgtctgacac 30850858  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 426
Target Start/End: Original strand, 14243665 - 14243712
Alignment:
Q  379 atgtagcaccgacactttagattgaaggtgtgtctcgtgtctgacaca 426  Q
    ||||| ||||||||||| |||||||||||||||||  |||||||||||    
T  14243665 atgtaccaccgacacttcagattgaaggtgtgtcttatgtctgacaca 14243712  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 380 - 418
Target Start/End: Original strand, 4323827 - 4323865
Alignment:
Q  380 tgtagcaccgacactttagattgaaggtgtgtctcgtgt 418  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  4323827 tgtagcactgacactttagattgaaggtgtgtctggtgt 4323865  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 377 - 412
Target Start/End: Complemental strand, 22016102 - 22016067
Alignment:
Q  377 ctatgtagcaccgacactttagattgaaggtgtgtc 412  Q
    ||||||||||||||||||||||||||||||||||||    
T  22016102 ctatgtagcaccgacactttagattgaaggtgtgtc 22016067  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 419
Target Start/End: Original strand, 35053683 - 35053725
Alignment:
Q  377 ctatgtagcaccgacactttagattgaaggtgtgtctcgtgtc 419  Q
    |||||||||||||||||||  ||||||||||||||||||||||    
T  35053683 ctatgtagcaccgacacttctgattgaaggtgtgtctcgtgtc 35053725  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 376 - 418
Target Start/End: Original strand, 35069999 - 35070041
Alignment:
Q  376 cctatgtagcaccgacactttagattgaaggtgtgtctcgtgt 418  Q
    ||||||||||||||||||||  |||||||||||||||| ||||    
T  35069999 cctatgtagcaccgacacttctgattgaaggtgtgtctagtgt 35070041  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 425
Target Start/End: Original strand, 41016447 - 41016488
Alignment:
Q  384 gcaccgacactttagattgaaggtgtgtctcgtgtctgacac 425  Q
    ||||||||||||  |||||||||||||||| |||||||||||    
T  41016447 gcaccgacacttctgattgaaggtgtgtctagtgtctgacac 41016488  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 378 - 424
Target Start/End: Original strand, 32541218 - 32541264
Alignment:
Q  378 tatgtagcaccgacactttagattgaaggtgtgtctcgtgtctgaca 424  Q
    ||||||||||||||||||| ||||||||| |||||| ||||||||||    
T  32541218 tatgtagcaccgacactttggattgaaggcgtgtctggtgtctgaca 32541264  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 376 - 424
Target Start/End: Complemental strand, 41047996 - 41047948
Alignment:
Q  376 cctatgtagcaccgacactttagattgaaggtgtgtctcgtgtctgaca 424  Q
    |||||||||||||||||||| | |||||||||||||||  |||||||||    
T  41047996 cctatgtagcaccgacacttcacattgaaggtgtgtctgctgtctgaca 41047948  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 377 - 411
Target Start/End: Complemental strand, 47126373 - 47126339
Alignment:
Q  377 ctatgtagcaccgacactttagattgaaggtgtgt 411  Q
    ||||||| |||||||||||||||||||||||||||    
T  47126373 ctatgtatcaccgacactttagattgaaggtgtgt 47126339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 376 - 428
Target Start/End: Original strand, 45551304 - 45551356
Alignment:
Q  376 cctatgtagcaccgacactttagattgaaggtgtgtctcgtgtctgacacaga 428  Q
    ||||||||| || |||| |||||||||||| ||||||| |||| |||||||||    
T  45551304 cctatgtagtactgacattttagattgaagatgtgtctggtgtgtgacacaga 45551356  T

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