View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16503_low_11 (Length: 451)
Name: NF16503_low_11
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 400; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 20 - 427
Target Start/End: Complemental strand, 29869526 - 29869119
Alignment:
| Q |
20 |
gggagttacggtaaaaatatgcggtgaaaataattcagtaaatgtagtaaatgataaatggtaggcaaagaatttgccagtctaccccaaacgataaaga |
119 |
Q |
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| T |
29869526 |
gggagttacggtaaaaatatgcggtgaaaaaaattcagtaaatgtagtaaatgataaatggtaggcaaagaatttgccagtctaccccaaacgataaaga |
29869427 |
T |
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| Q |
120 |
aactaacagactgatctgcttctgacctaccaaagctgtactgatgactaactattatgaaggtctataattcggtaaatttctttacacaatatacaga |
219 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29869426 |
aactaacagaccgatctgcttctgacctaccaaagctgtactgatgactaactattatgaaggtctataattcggtaaatttctttacacaatatacaga |
29869327 |
T |
|
| Q |
220 |
catgcttaagtaaggtgagatgatatcatgaacttgcagatcaatgctcttgcttaactcttgcctttaatattccagggagtggaggtgatgtcggagg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29869326 |
catgcttaagtaaggtgagatgatatcatgaacttgcagatcaatgctcttgcttaactcttgcctttaatattccagggagtggaggtgatgtcggagg |
29869227 |
T |
|
| Q |
320 |
cctaactaacatgtttgaaactgactgaggaacctgtgattgatacatgcctgacatgctagaaccttcccctccatccgcaatattgtgtgtaacattg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29869226 |
cctaactaacatgtttgaaactgactgaggaacctgtgattgatacatgcctgacatgctagaaccttcccctccatccgcaatattgtgtgtaacattg |
29869127 |
T |
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| Q |
420 |
tcactctg |
427 |
Q |
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|||||||| |
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| T |
29869126 |
tcactctg |
29869119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 187 - 429
Target Start/End: Complemental strand, 29874469 - 29874227
Alignment:
| Q |
187 |
taattcggtaaatttctttacacaatatacagacatgcttaagtaaggtgagatgatatcatgaacttgcagatcaatgctcttgcttaactcttgcctt |
286 |
Q |
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| T |
29874469 |
taattgggaaaatttctttacagaatgtacagacatgcttaattagggtacgacgatatcataatcttgcagatcaatgctcttgtttgactcttgcttt |
29874370 |
T |
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| Q |
287 |
taatattccagggagtggaggtgatgtcggaggcctaactaacatgtttgaaactgactgaggaacctgtgattgatacatgcctgacatgctagaacct |
386 |
Q |
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||||||||||||||||||||||||||| ||||| ||| | ||| | ||||| |||| ||||||||||||| |||| |||||||||||||||||||||| |
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| T |
29874369 |
taatattccagggagtggaggtgatgttggaggtctagttgacacgcttgaagctgaaggaggaacctgtgactgatgcatgcctgacatgctagaacct |
29874270 |
T |
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| Q |
387 |
tcccctccatccgcaatattgtgtgtaacattgtcactctgtg |
429 |
Q |
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| T |
29874269 |
tcccctccatctgtaacattgtgtgtaacaatatcactctgtg |
29874227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 8e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 239 - 413
Target Start/End: Complemental strand, 44576994 - 44576820
Alignment:
| Q |
239 |
atgatatcatgaacttgcagatcaatgctcttgcttaactcttgcctttaatattccagggagtggaggtgatgtcggaggcctaactaacatgtttgaa |
338 |
Q |
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|||||||||| ||||||||||||| | |||| || |||||| |||| | ||||||||| ||||||||||||| | ||||||||| | ||| | ||||| |
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| T |
44576994 |
atgatatcataaacttgcagatcattactctactttgactcttaccttaagtattccaggaagtggaggtgatgccagaggcctaattgacacgcttgaa |
44576895 |
T |
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| Q |
339 |
actgactgaggaacctgtgattgatacatgcctgacatgctagaaccttcccctccatccgcaatattgtgtgta |
413 |
Q |
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||||| |||||||||| | |||| || |||||||| |||||||||||||||||| |||| || |||| ||||| |
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| T |
44576894 |
actgaaggaggaacctgcaactgatgcaagcctgacaagctagaaccttcccctccttccgtaacattgagtgta |
44576820 |
T |
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