View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16503_low_12 (Length: 449)
Name: NF16503_low_12
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 20 - 381
Target Start/End: Original strand, 3093191 - 3093558
Alignment:
| Q |
20 |
agagatgcctaaatctcttaagtttgtgtatacaatgattttatttattttcctattccttataacaaagaatgttgatggtgatatatt---tttcatc |
116 |
Q |
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| T |
3093191 |
agagatgcctaaatctcttaagtttgtgtatactatgattttatttattttcctatttcttataacaaagaatgttgatggtgatatattatttttcatc |
3093290 |
T |
|
| Q |
117 |
cttttcaaattgtattatttatttgtagtttggaatcctttatctcattttagtaacattattttatcttgnnnnnnncttcatgcagctctacatgatt |
216 |
Q |
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| T |
3093291 |
cttttcaaattgtattatttatttgtagtttggaatcctttatctcattttaataacattattttatcttgtttttttcttcatgcagctctacatgatt |
3093390 |
T |
|
| Q |
217 |
gtgaatatgatgatgattgcccaaaaagtacttcgaaacggacgtataagtgcattgataacaaatgtaggtcctacttcacaaaagtggaaaaataggt |
316 |
Q |
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| T |
3093391 |
gtgaatatgatgatgattgcccaaaaagtacttcgaaacggacctataggtgcattaataaaaaatgtaggtcctacttcacaagagtggaaaagtaggt |
3093490 |
T |
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| Q |
317 |
ccttgtt---nnnnnnnntggtaaatgtggcttttttaaaatatatcaatgatagaatgagttctaaa |
381 |
Q |
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| T |
3093491 |
ccttgttaagaaaaaaaatggtaaatgtggcttttttaaaatatctcaatgatagaatgagttctaaa |
3093558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 386 - 446
Target Start/End: Original strand, 3093615 - 3093675
Alignment:
| Q |
386 |
aatatatgtaatatacattttgctagaacattccatagatttcatttaattattgtgttgg |
446 |
Q |
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| T |
3093615 |
aatatatgtaatataccttttgctagaacattccatagatttcatttaattattgtgttgg |
3093675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 127
Target Start/End: Complemental strand, 4661650 - 4661564
Alignment:
| Q |
43 |
ttgtgtatacaatgattttatttattttcctattccttataacaaagaatgttgatggtga--tatatttttcatccttttcaaatt |
127 |
Q |
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| T |
4661650 |
ttgtgtatactataattttatttattttcctattccttgttgcaaataatgttgagggtaatgtttttttttcaaccttttcaaatt |
4661564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 4595316 - 4595227
Alignment:
| Q |
38 |
taagtttgtgtatacaatgattttatttattttcctattccttataacaaagaatgttgatggtgatatatttttcatccttttcaaatt |
127 |
Q |
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| T |
4595316 |
taagtttgtgtatgccataattttttttattttcctatttcttgttgcaaataatgttgagggtaattttttttccattcttttcaaatt |
4595227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 25417805 - 25417851
Alignment:
| Q |
29 |
taaatctcttaagtttgtgtatacaatgattttatttattttcctat |
75 |
Q |
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| T |
25417805 |
taaaactcttaagtttgtgtatgatatgattttatttattttcctat |
25417851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 39 - 112
Target Start/End: Complemental strand, 20890266 - 20890193
Alignment:
| Q |
39 |
aagtttgtgtatacaatgattttatttattttcctattccttataacaaagaatgttgatggtgatatattttt |
112 |
Q |
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| T |
20890266 |
aagtttgtgtatgttatgattttatttcttttcctatttcttattacaaagaacattgaaggtaatctattttt |
20890193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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