View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16503_low_13 (Length: 445)
Name: NF16503_low_13
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 43587212 - 43586780
Alignment:
| Q |
1 |
ttgctacctttgttgggtttggttaatgtaagagtactagaaaggggctgaagctaatttcgcacacggtgctttggtcgatttggaagtctagaccgag |
100 |
Q |
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| T |
43587212 |
ttgctacctttgttgggtttggttaatgtaagaacactagaaaggggctgaagctaatttggcacacaatgctttggtcgatttggaagtctagaccgag |
43587113 |
T |
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| Q |
101 |
cacctatttaataataacgttgagaaggcggctgaggtagttgatagagtcaaagtgttctgtcttggcgattgtacatagggagggtggcttgttatcc |
200 |
Q |
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|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43587112 |
cacctatttattaataacgttgagaacgcggctgaggtagttgatagagtcaaagtgttctgtcttggcgattgtacatagggagggtggcttgttatcc |
43587013 |
T |
|
| Q |
201 |
ttgccttgtcctttctatgaatcgtcctgggatccttttggatgtttggttagataatcttctaaattttggagtagaagcagggctaatctgtattgag |
300 |
Q |
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| T |
43587012 |
ttgccttgtcctttcaatgaatcgtcctgggatccttttggatgtttggttagataatcttctaaattttggagtagaagcagggctaatctgtattgag |
43586913 |
T |
|
| Q |
301 |
ttctgctggttgttatatctcggttgttgaggtccttggtggctggctttactttatcacgtgacgtgtc--nnnnnnnncttccgggctttagaagtgt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
43586912 |
ttctgctggttgttatatctcggttgttgaggtccttggtggttggctttactttatcacgtgacgtgtcttttttttttcttccgggctttagaagtgt |
43586813 |
T |
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| Q |
399 |
aatgttgcttcctagcttctgctgtgtgatttg |
431 |
Q |
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||| ||||||||| ||||||||||||||||| |
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| T |
43586812 |
ggtgtcgcttcctagtttctgctgtgtgatttg |
43586780 |
T |
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