View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16503_low_14 (Length: 409)
Name: NF16503_low_14
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 20 - 390
Target Start/End: Original strand, 44638454 - 44638839
Alignment:
| Q |
20 |
aatagaatattgatccacaaaagcaattaattgtcaacaatgaaaatacagagaagatgagaataacacctcaaactgagttgtatgttagcttgaatta |
119 |
Q |
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| T |
44638454 |
aatagaatattgatccacaaaagcaattaatagtcaacaatgaaaatacagagaagatgagaataacacctcaaactgagttgtatgttagcttgaatta |
44638553 |
T |
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| Q |
120 |
taaggtaagtagctgaccaatggtaagagttaaaaaagacattgtattcttgataataatcgccctcattaattattaatcttatattccattgacataa |
219 |
Q |
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| T |
44638554 |
taaggtaagtagctgaccaatggtaagagttaaaaaagacattgtattcttgataataatcgccctcattaattattaatcttatattccattgacataa |
44638653 |
T |
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| Q |
220 |
acatatagaattatatatttagagtcggaacagcaagcaaataataaagtccctttcatt---------------aatggaataaatacacaaattgtaa |
304 |
Q |
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| T |
44638654 |
acatatagaattatatatttagagtcggaacagcaagcaaataataaattccctttcattaatacatcaaccgaaaatggaataaatacacaaattgtaa |
44638753 |
T |
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| Q |
305 |
ttgtaagcataagaaaatattaaaagaaaacgcgttgttattaagagaatgttctttcaataataccaacctgtggtgtgggttca |
390 |
Q |
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| T |
44638754 |
ttgtaagcataagaaaatattaaaagaaaacgcgttgttattaagagaatgttctttcaataataccaacctgtggtgtgggttca |
44638839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 27 - 226
Target Start/End: Original strand, 44650642 - 44650847
Alignment:
| Q |
27 |
tattgatccacaaaagcaattaattgtcaacaatgaaaatacagagaagatgagaataacacctcaaactgagttgtatgttagcttgaattataaggta |
126 |
Q |
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| T |
44650642 |
tattgatccacaaaagcaattaattgtcaacaaccaaaatacagagaagatgagaataacacctcaaactgagtagaaagttagcttgaattataagtta |
44650741 |
T |
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| Q |
127 |
agtagctgaccaatggtaagagttaaaaaagacattgtattcttgataataatcgcc------ctcattaattattaatcttatattccattgacataaa |
220 |
Q |
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| T |
44650742 |
agtagctgatgaacggtaagagttaaaaaagacatagtatttttggtattaatcgccaccaatattattaattataaatcgtatatttcattgacataaa |
44650841 |
T |
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| Q |
221 |
catata |
226 |
Q |
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| T |
44650842 |
catata |
44650847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 151 - 250
Target Start/End: Complemental strand, 44651981 - 44651882
Alignment:
| Q |
151 |
aaaaaagacattgtattcttgataataatcgccctcattaattattaatcttatattccattgacataaacatatagaattatatatttagagtcggaac |
250 |
Q |
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| T |
44651981 |
aaaaatgaaattatattcttgataataatcgcaaccattaattattaatgttatattccattgacataaacatatataattatatatttagagtcggaac |
44651882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 152 - 219
Target Start/End: Complemental strand, 44680805 - 44680736
Alignment:
| Q |
152 |
aaaaagacattgtattcttgataataatcgccctcattaatta--ttaatcttatattccattgacataa |
219 |
Q |
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| T |
44680805 |
aaaaagacattgtattcttgatattaatcgccactattaattattttaatcttatattccattgacataa |
44680736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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