View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16503_low_17 (Length: 354)
Name: NF16503_low_17
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 95 - 353
Target Start/End: Original strand, 1491244 - 1491498
Alignment:
| Q |
95 |
attatgacgttcacatataaatcttctcataaatatttgaacaaggggatgctaatttagttaattgatccaagtcaaccattatatttgctctctacga |
194 |
Q |
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| T |
1491244 |
attatgacgttcacatataaatcttctcataaatatttgaacaaagggatgttaatttagttaattgatccaagtcaaccattatatttgctctctatga |
1491343 |
T |
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| Q |
195 |
tccttggccttccattgttgtgttggctcggagacattattttccttgatcctctccacatttagtctcaactattaaaagggactaacggagggtgaca |
294 |
Q |
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| T |
1491344 |
tccttggccttccattgttgtgttggctcggagacattattttcctcgatcctctccccatttagtctcaactattaaaagggactaacggagggtgaca |
1491443 |
T |
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| Q |
295 |
tgacactgatgttgctaattaagttcatgttccacaatttatgtgtcatttagtctggt |
353 |
Q |
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| T |
1491444 |
tgacactgatgttgc----taagttcatgttccacaatttatgtgtcatttagtctggt |
1491498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 1490032 - 1490112
Alignment:
| Q |
18 |
atgaatggccaacgtcaacatacgagaagaaaaacaaaaacaaacttgccaccctattgtgtgtaaatgaattgataatta |
98 |
Q |
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| T |
1490032 |
atgaatggccaacgtcaacatacgagaagaaaaacaaaaacaaacttgccaccctattgtgtggaaatgaattgataatta |
1490112 |
T |
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