View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16503_low_18 (Length: 330)

Name: NF16503_low_18
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16503_low_18
NF16503_low_18
[»] chr5 (17 HSPs)
chr5 (1-316)||(37399095-37399410)
chr5 (1-316)||(37380618-37380930)
chr5 (105-317)||(37825465-37825686)
chr5 (188-319)||(37534650-37534781)
chr5 (188-319)||(37713174-37713305)
chr5 (188-317)||(37641433-37641562)
chr5 (188-319)||(37595880-37596014)
chr5 (188-316)||(37441499-37441625)
chr5 (188-316)||(37391420-37391548)
chr5 (188-317)||(37704220-37704349)
chr5 (188-319)||(37698343-37698474)
chr5 (1-146)||(37441678-37441820)
chr5 (200-319)||(37437251-37437370)
chr5 (188-294)||(37411785-37411891)
chr5 (193-319)||(37430307-37430433)
chr5 (1-122)||(37391217-37391338)
chr5 (101-181)||(37534806-37534889)
[»] chr3 (1 HSPs)
chr3 (213-313)||(14554615-14554715)
[»] chr4 (2 HSPs)
chr4 (192-317)||(24216220-24216345)
chr4 (220-319)||(16841390-16841489)


Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 37399095 - 37399410
Alignment:
Q  1 tgcctcatacggtttgaagaaagcacccctaactacaaaacaagagcatgccaagacttattcaattatgtttcacatataaataactagagtgtaatgg 100  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37399095 tgcctcgtacggtttgaagaaagcacccctaactagaaaacaagagcatgccaagacttattcagttatgtttcacatataaataactagagtgtaatgg 37399194  T
Q  101 attggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtctaagtcgctctaaatggggtcgttttttacctttctc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||  |||| |    
T  37399195 attggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtctaagtcgctcgaaatggggtccttttttaaatttcac 37399294  T
Q  201 ttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactcttttt 300  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| | ||||||| |||||||||||||||||||||||| || ||||    
T  37399295 ttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaattcatttt 37399394  T
Q  301 ctgtcaacacttcatc 316  Q
     |||  ||||||||||    
T  37399395 ttgttgacacttcatc 37399410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 37380618 - 37380930
Alignment:
Q  1 tgcctcatacggtttgaagaaa-gcacccctaactacaaaacaagagcatgccaagacttattcaattatgtttcacatataaataactagagtgtaatg 99  Q
    |||||||||||||| ||||||| |||||||| |||| ||||||| |||||||||||||||| ||  |||||||||  ||||||||| |||||||||||||    
T  37380618 tgcctcatacggtt-gaagaaaagcaccccttactataaaacaatagcatgccaagacttactcggttatgtttcctatataaatacctagagtgtaatg 37380716  T
Q  100 gattggtacatacaaaatcatcataaagtaaaaaagaaataatattggtaagagagtattagtctaagtcgctctaaatggggtcgttttttacctttct 199  Q
    ||||||||||||||| |||||||   | ||||||||||| ||||||| ||| ||||||| ||||||||||| ||||||||||||| |||||||||||||     
T  37380717 gattggtacatacaacatcatca---actaaaaaagaaagaatattgataatagagtataagtctaagtcgttctaaatggggtccttttttacctttca 37380813  T
Q  200 cttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttt 299  Q
    ||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||| ||||||| |  |||||||||||||| ||||||||||| |||    
T  37380814 cttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttcaaaaactcattt 37380913  T
Q  300 tctgtcaacacttcatc 316  Q
    ||| |||||||||||||    
T  37380914 tctttcaacacttcatc 37380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 105 - 317
Target Start/End: Complemental strand, 37825686 - 37825465
Alignment:
Q  105 gtacatacaaaatcat--cataaagtaaaaaagaaataatattggtaagagagtatta-gtctaagtcgctctaaatggggtcgttttttacctttc--- 198  Q
    |||||| |||||||||  ||||||| ||||| |||| |||| ||  |||||||||||| || |||||  ||||||||||| || |||||||||||||       
T  37825686 gtacatccaaaatcatatcataaaggaaaaaggaaagaatactgagaagagagtattaagtgtaagtttctctaaatgggatccttttttacctttcact 37825587  T
Q  199 ---tcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactc 295  Q
       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37825586 ttttcttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactc 37825487  T
Q  296 tttttctgtcaacacttcatct 317  Q
    ||||||||||||||||||||||    
T  37825486 tttttctgtcaacacttcatct 37825465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 37534781 - 37534650
Alignment:
Q  188 ttttacctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 287  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37534781 ttttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 37534682  T
Q  288 aaaaactctttttctgtcaacacttcatctca 319  Q
    ||||||||||||||||||| ||||||||||||    
T  37534681 aaaaactctttttctgtcagcacttcatctca 37534650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 37713305 - 37713174
Alignment:
Q  188 ttttacctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 287  Q
    ||||||||||| ||| |||| |||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  37713305 ttttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 37713206  T
Q  288 aaaaactctttttctgtcaacacttcatctca 319  Q
    ||||||||||||||||||||||||||||||||    
T  37713205 aaaaactctttttctgtcaacacttcatctca 37713174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 188 - 317
Target Start/End: Complemental strand, 37641562 - 37641433
Alignment:
Q  188 ttttacctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 287  Q
    ||||||||||| ||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||    
T  37641562 ttttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatgacacctctgccttgttacaattc 37641463  T
Q  288 aaaaactctttttctgtcaacacttcatct 317  Q
    ||||||||||||||||||||||||||||||    
T  37641462 aaaaactctttttctgtcaacacttcatct 37641433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 37596014 - 37595880
Alignment:
Q  188 ttttacctttctcttgttcttgttgttgttgat---tactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaa 284  Q
    ||||||||||| ||| ||||||||||||||| |   |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  37596014 ttttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaacatgacaactctgccttgttacaa 37595915  T
Q  285 ttcaaaaactctttttctgtcaacacttcatctca 319  Q
    |||||||||||||||||||||||||||||||||||    
T  37595914 ttcaaaaactctttttctgtcaacacttcatctca 37595880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 37441625 - 37441499
Alignment:
Q  188 ttttacctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 287  Q
    ||||||||||| | ||||||| |||||| || |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  37441625 ttttacctttcacatgttcttcttgttgctgcttactcattttacttcctatactttctcactgtgaaacaaacatgacacctctgccttgttacaattc 37441526  T
Q  288 aaaaactctttttctgtcaacacttcatc 316  Q
    ||||||||  |||| ||||||||||||||    
T  37441525 aaaaactc--tttcagtcaacacttcatc 37441499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 316
Target Start/End: Original strand, 37391420 - 37391548
Alignment:
Q  188 ttttacctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 287  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||| ||||| ||||||||   ||||| | |||||||||| ||||||||    
T  37391420 ttttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgtgcaaccttcatgatagctctgccttgctacaattc 37391519  T
Q  288 aaaaactctttttctgtcaacacttcatc 316  Q
    |||||||| |||| |||||||||||||||    
T  37391520 aaaaactcattttttgtcaacacttcatc 37391548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 188 - 317
Target Start/End: Complemental strand, 37704349 - 37704220
Alignment:
Q  188 ttttacctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 287  Q
    |||||| |||| |||||||||||| ||| || ||||||||||||||||||| ||||||||| |||||| | ||||||| | ||| |||||||||||||||    
T  37704349 ttttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattc 37704250  T
Q  288 aaaaactctttttctgtcaacacttcatct 317  Q
    ||| |||| |||||||||||||||||||||    
T  37704249 aaacactcattttctgtcaacacttcatct 37704220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 188 - 319
Target Start/End: Complemental strand, 37698474 - 37698343
Alignment:
Q  188 ttttacctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 287  Q
    |||| |||||| ||| ||||||||||||||| ||||||||||||||||||| ||  ||||| | |||||| | |||||||  ||||||||||||||||||    
T  37698474 ttttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaaccatcatgacagttctgccttgttacaattc 37698375  T
Q  288 aaaaactctttttctgtcaacacttcatctca 319  Q
    |||||||| ||||| || |||||||| |||||    
T  37698374 aaaaactcattttcagttaacacttcgtctca 37698343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 37441820 - 37441678
Alignment:
Q  1 tgcctcatacggtttgaagaaa-gcacccctaactacaaaacaagagcatgccaagacttattcaattatgtttcacatataaataactagagtgtaatg 99  Q
    |||||||||||||| ||||||| ||  |||| |||||||||||||||||||||||||||| |||   | |||||| |||||||||||||| ||| |||||    
T  37441820 tgcctcatacggtt-gaagaaaagcgtcccttactacaaaacaagagcatgccaagacttgttcggctgtgtttcccatataaataactacagtttaatg 37441722  T
Q  100 gattggtacatacaaaatcatcataaagtaaaaaagaaataatattg 146  Q
    |||||||||||||| |||| ||   |||||||||||||| |||||||    
T  37441721 gattggtacatacataatcctc---aagtaaaaaagaaagaatattg 37441678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 200 - 319
Target Start/End: Complemental strand, 37437370 - 37437251
Alignment:
Q  200 cttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttt 299  Q
    |||||||| |||||||||| ||||||| |||||| || | ||||||||| | |||||| | ||||||| ||||||||| |||||||||||||||||||||    
T  37437370 cttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaaccatcatgacacctctgccttattacaattcaaaaactctttt 37437271  T
Q  300 tctgtcaacacttcatctca 319  Q
      | ||||||||||||||||    
T  37437270 cttctcaacacttcatctca 37437251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 188 - 294
Target Start/End: Original strand, 37411785 - 37411891
Alignment:
Q  188 ttttacctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattc 287  Q
    ||||||||||| ||||||||||||| || || ||||||||||||||||||| || |||||| | |||||| | ||||||| || ||||||||||||||||    
T  37411785 ttttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttctcattatgcaactatcatgacagctttgccttgttacaattc 37411884  T
Q  288 aaaaact 294  Q
    || ||||    
T  37411885 aagaact 37411891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 193 - 319
Target Start/End: Complemental strand, 37430433 - 37430307
Alignment:
Q  193 cctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaa 292  Q
    |||||| ||||||||||||| || || | |||| ||||||||||||||| || ||| |||||||  | |||||||  |||||||||||||||||||| ||    
T  37430433 cctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaagcatcatgacagttctgccttgttacaattcaagaa 37430334  T
Q  293 ctctttttctgtcaacacttcatctca 319  Q
     || |||| | ||||||||||||||||    
T  37430333 ttcattttttatcaacacttcatctca 37430307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 37391217 - 37391338
Alignment:
Q  1 tgcctcatacggtttgaag-aaagcacccctaactacaaaacaagagcatgccaagacttattcaattatgtttcacatataaataactagagtgtaatg 99  Q
    |||||||||||| |||||| ||||||||||| |||||| ||||||||||||||||||||| |||  |||||||||  ||||| |||  | |||  ||||     
T  37391217 tgcctcatacgg-ttgaagaaaagcaccccttactacataacaagagcatgccaagacttgttcggttatgtttcctatatatatagattgaggctaatc 37391315  T
Q  100 gattggtacatacaaaatcatca 122  Q
     |||||||||| |||||||||||    
T  37391316 aattggtacattcaaaatcatca 37391338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 181
Target Start/End: Complemental strand, 37534889 - 37534806
Alignment:
Q  101 attggtacatacaaaatcat--cataaagtaaaaaagaaataatattggtaagagagtatt-agtctaagtcgctctaaatggg 181  Q
    |||||||||| |||||||||  ||||||| ||||| ||||||||| ||  ||||||||||| ||| |||||  |||||||||||    
T  37534889 attggtacatccaaaatcatatcataaaggaaaaaggaaataatactgagaagagagtattaagtgtaagtttctctaaatggg 37534806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 213 - 313
Target Start/End: Complemental strand, 14554715 - 14554615
Alignment:
Q  213 ttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacactt 312  Q
    |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14554715 ttgttgcttactcattttacttcctatactttctcattgtgcaaccaacatgacacctctgccttgttacaattcaaaaactctttttctgtcaacactt 14554616  T
Q  313 c 313  Q
    |    
T  14554615 c 14554615  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 192 - 317
Target Start/End: Original strand, 24216220 - 24216345
Alignment:
Q  192 acctttctcttgttcttgttgttgttgattactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaa 291  Q
    ||||||| ||||||| ||||||||||| |||||||||||||||| || |||| |||| | |||||| | |||||||  ||||| |||||||||||||| |    
T  24216220 acctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatgacagttctgcattgttacaattcaaga 24216319  T
Q  292 actctttttctgtcaacacttcatct 317  Q
    |||| |||  ||||||||||||||||    
T  24216320 actcatttgttgtcaacacttcatct 24216345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 220 - 319
Target Start/End: Original strand, 16841390 - 16841489
Alignment:
Q  220 ttactcattttacttcctatactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctca 319  Q
    ||||||| ||||||||  | ||||| ||| | |||||| ||||||||| |||||| |||||||| ||||||||||| |||||||||||||||||||||||    
T  16841390 ttactcactttacttcacacactttgtcattctgcaaccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatctca 16841489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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