View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16503_low_19 (Length: 322)
Name: NF16503_low_19
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 42835413 - 42835724
Alignment:
| Q |
1 |
tcacttatgtttcacaatacgccatttaatataaagtgttattaaatagcggttattctggcgctataatcttgttgtagaatatttgaatttgaacaaa |
100 |
Q |
| |
|
||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42835413 |
tcactgatgtttcgcaatatgccatttaatataaagtgttattaaatagcggttattgtggcgctataatcttgttgtagaatatttgaatttgaacaaa |
42835512 |
T |
|
| Q |
101 |
cctatattttctgcgatttgcaattgacaagattaacaagttactaatattt------gtatatgtatatgtatgttttcttcctgtgatttatggtgga |
194 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42835513 |
cctatattttctgcgatttgcaattgacaagattaacaagttactactatttatatatgtatatgtatatgtatgttttcttcctgtgatttatggtgga |
42835612 |
T |
|
| Q |
195 |
taggaggcttctaaccaaattattttatacattgttagattatgtttttcatctcaaaacttgatgtcatcaagagttcaaattctgatacctacattat |
294 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42835613 |
tgggaggcttctaaccaaattattttatacattattagattatgtttttcatctcaaaacttgatgtcatcaagagttcaaattctgatacctacattat |
42835712 |
T |
|
| Q |
295 |
gtttgaggaagc |
306 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42835713 |
gtttgaggaagc |
42835724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 288
Target Start/End: Original strand, 42502782 - 42502873
Alignment:
| Q |
197 |
ggaggcttctaaccaaattattttatacattgttagattatgtttttcatctcaaaacttgatgtcatcaagagttcaaattctgataccta |
288 |
Q |
| |
|
|||||| |||||| ||||| ||||||| ||||||| |||||||||||||||| |||| ||||||| |||||||| | ||||| || ||||| |
|
|
| T |
42502782 |
ggaggcatctaacttaattactttataccttgttaggttatgtttttcatctcgaaacctgatgtcttcaagagtcctaattcagagaccta |
42502873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 48605241 - 48605199
Alignment:
| Q |
88 |
gaatttgaacaaacctatattttctgcgatttgcaattgacaa |
130 |
Q |
| |
|
|||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
48605241 |
gaatttgaacaaacctctgttttctgcgatttgcaattgacaa |
48605199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 42499520 - 42499588
Alignment:
| Q |
239 |
tttttcatctcaaaacttgatgtcatcaagagttcaaattctgatacctacattatgtttgaggaagct |
307 |
Q |
| |
|
|||||||||||||||| |||||| ||||||| |||||||||| |||||||| || |||| ||||||| |
|
|
| T |
42499520 |
tttttcatctcaaaacctgatgtgttcaagagcccaaattctgagacctacataatatttggggaagct |
42499588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 18899962 - 18899920
Alignment:
| Q |
88 |
gaatttgaacaaacctatattttctgcgatttgcaattgacaa |
130 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
18899962 |
gaatttgaacaaactactattttctgcgatttgcaattgacaa |
18899920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 307
Target Start/End: Complemental strand, 34571060 - 34570996
Alignment:
| Q |
243 |
tcatctcaaaacttgatgtcatcaagagttcaaattctgatacctacattatgtttgaggaagct |
307 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||| |||||| ||||||||||| |||| ||||||| |
|
|
| T |
34571060 |
tcatctcaaaaccagatgttttcaagagtccaacttctgacacctacattatatttggggaagct |
34570996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University