View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16503_low_23 (Length: 288)

Name: NF16503_low_23
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16503_low_23
NF16503_low_23
[»] chr3 (17 HSPs)
chr3 (1-270)||(21513365-21513634)
chr3 (200-283)||(49634045-49634128)
chr3 (144-208)||(3845210-3845274)
chr3 (144-203)||(52925714-52925773)
chr3 (218-268)||(49891284-49891334)
chr3 (166-210)||(2410026-2410070)
chr3 (144-210)||(12674936-12675002)
chr3 (144-208)||(54596741-54596805)
chr3 (199-270)||(43965629-43965700)
chr3 (249-283)||(35253473-35253507)
chr3 (230-283)||(190852-190905)
chr3 (145-186)||(38332657-38332698)
chr3 (169-210)||(41115458-41115499)
chr3 (193-257)||(29064042-29064106)
chr3 (221-269)||(32523360-32523408)
chr3 (166-210)||(33548188-33548232)
chr3 (166-210)||(43987648-43987692)
[»] chr5 (22 HSPs)
chr5 (151-268)||(17862453-17862570)
chr5 (147-241)||(1102077-1102171)
chr5 (148-210)||(1105366-1105428)
chr5 (144-238)||(7328690-7328784)
chr5 (199-283)||(42439623-42439707)
chr5 (198-269)||(29923236-29923307)
chr5 (196-267)||(34195204-34195274)
chr5 (144-270)||(10859857-10859983)
chr5 (144-210)||(13224715-13224780)
chr5 (155-209)||(35439049-35439103)
chr5 (166-260)||(38592175-38592269)
chr5 (198-283)||(12432959-12433044)
chr5 (166-210)||(38045394-38045438)
chr5 (144-210)||(29922817-29922883)
chr5 (218-259)||(3970430-3970471)
chr5 (164-205)||(12208944-12208985)
chr5 (144-200)||(14670941-14670997)
chr5 (145-208)||(39097188-39097251)
chr5 (198-276)||(6413959-6414036)
chr5 (144-184)||(3043126-3043166)
chr5 (144-208)||(18637225-18637289)
chr5 (218-270)||(42194550-42194602)
[»] chr7 (16 HSPs)
chr7 (201-270)||(18349772-18349841)
chr7 (169-276)||(48917471-48917578)
chr7 (218-276)||(19098498-19098556)
chr7 (144-270)||(38123685-38123810)
chr7 (144-210)||(45369085-45369151)
chr7 (145-210)||(12306658-12306723)
chr7 (172-246)||(45821721-45821796)
chr7 (144-210)||(45004908-45004974)
chr7 (144-208)||(883377-883441)
chr7 (144-208)||(1242706-1242770)
chr7 (151-211)||(21436095-21436155)
chr7 (166-210)||(48290336-48290380)
chr7 (188-239)||(33504503-33504554)
chr7 (201-276)||(47306691-47306766)
chr7 (144-210)||(15050215-15050281)
chr7 (146-210)||(12306902-12306966)
[»] chr1 (13 HSPs)
chr1 (221-270)||(48832907-48832956)
chr1 (166-270)||(1233268-1233371)
chr1 (198-270)||(35592491-35592562)
chr1 (144-215)||(18325182-18325253)
chr1 (198-263)||(28024711-28024776)
chr1 (218-270)||(11049264-11049316)
chr1 (166-210)||(15452431-15452475)
chr1 (166-210)||(32088669-32088713)
chr1 (201-276)||(39289276-39289351)
chr1 (220-270)||(31785072-31785122)
chr1 (177-210)||(48635287-48635320)
chr1 (147-211)||(4458502-4458566)
chr1 (218-270)||(27500299-27500351)
[»] chr2 (19 HSPs)
chr2 (144-236)||(9943346-9943438)
chr2 (197-276)||(44810368-44810447)
chr2 (224-270)||(13246759-13246805)
chr2 (203-265)||(3654918-3654980)
chr2 (199-269)||(28028837-28028907)
chr2 (144-186)||(40582672-40582714)
chr2 (201-266)||(37561704-37561769)
chr2 (201-269)||(37402253-37402321)
chr2 (146-210)||(37561632-37561695)
chr2 (145-208)||(15928532-15928595)
chr2 (144-235)||(43717265-43717355)
chr2 (164-210)||(7630359-7630405)
chr2 (144-210)||(44670990-44671056)
chr2 (218-283)||(13238814-13238879)
chr2 (145-186)||(37420317-37420358)
chr2 (166-239)||(43501088-43501160)
chr2 (144-184)||(16013833-16013873)
chr2 (224-264)||(29823529-29823569)
chr2 (199-283)||(44439249-44439333)
[»] chr6 (12 HSPs)
chr6 (144-211)||(29240547-29240614)
chr6 (144-211)||(33136578-33136645)
chr6 (144-210)||(7262994-7263060)
chr6 (144-210)||(26550442-26550508)
chr6 (203-255)||(25195580-25195632)
chr6 (144-211)||(33141802-33141869)
chr6 (144-210)||(5724726-5724792)
chr6 (144-206)||(9604438-9604500)
chr6 (144-186)||(10400816-10400858)
chr6 (148-208)||(6653736-6653796)
chr6 (202-270)||(13687590-13687658)
chr6 (144-204)||(30926881-30926941)
[»] scaffold0024 (1 HSPs)
scaffold0024 (218-283)||(23599-23664)
[»] chr8 (13 HSPs)
chr8 (144-194)||(11038105-11038155)
chr8 (144-210)||(41614767-41614833)
chr8 (218-269)||(11791753-11791804)
chr8 (146-193)||(23979257-23979304)
chr8 (198-256)||(39648372-39648430)
chr8 (145-210)||(8252721-8252785)
chr8 (164-205)||(13929808-13929849)
chr8 (202-283)||(32837401-32837483)
chr8 (144-186)||(39648265-39648307)
chr8 (201-270)||(1836231-1836300)
chr8 (218-283)||(26100152-26100217)
chr8 (166-215)||(34469247-34469296)
chr8 (166-210)||(40881044-40881088)
[»] chr4 (25 HSPs)
chr4 (144-208)||(49138933-49138997)
chr4 (144-194)||(43075986-43076036)
chr4 (179-276)||(53782576-53782673)
chr4 (201-265)||(29904011-29904075)
chr4 (146-208)||(8330039-8330102)
chr4 (199-270)||(22683859-22683930)
chr4 (144-210)||(26617723-26617789)
chr4 (198-257)||(33560602-33560661)
chr4 (223-270)||(39218480-39218527)
chr4 (144-206)||(2171710-2171772)
chr4 (144-210)||(2206440-2206506)
chr4 (201-283)||(4014165-4014247)
chr4 (199-261)||(11271565-11271627)
chr4 (144-210)||(20712573-20712639)
chr4 (198-268)||(39672872-39672941)
chr4 (145-210)||(41058850-41058915)
chr4 (144-185)||(47179568-47179609)
chr4 (144-228)||(53159095-53159180)
chr4 (148-211)||(471962-472026)
chr4 (171-215)||(2206792-2206836)
chr4 (146-210)||(25318743-25318806)
chr4 (166-210)||(25318992-25319036)
chr4 (218-270)||(43628132-43628184)
chr4 (218-258)||(46978294-46978334)
chr4 (144-204)||(55085104-55085164)
[»] scaffold0393 (1 HSPs)
scaffold0393 (171-210)||(12403-12442)
[»] scaffold0168 (1 HSPs)
scaffold0168 (144-208)||(31749-31813)


Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 21513634 - 21513365
Alignment:
Q  1 tcatagctcatagtacaccatgaacttcgatatttctgcaaaatgcaggaaaatgcggttgtgatatcgctttgaactgcagtcacaattgcagttccgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513634 tcatagctcatagtacaccatgaacttcgatatttctgcaaaatgcaggaaaatgcggttgtgatatcgctttgaactgcagtcacaattgcagttccgt 21513535  T
Q  101 gaacacaatttagaattatgtttggttttaattttttatggagaaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtag 200  Q
    || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  21513534 gagcacaatttagaattatgtttggtttcaattttttatggagaaaattgattctagaggtggagaattgattttaacatgcttggatgttctcaagtag 21513435  T
Q  201 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21513434 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 21513365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 283
Target Start/End: Complemental strand, 49634128 - 49634045
Alignment:
Q  200 gaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcact 283  Q
    ||||||||| ||||||  ||||||||||||||||||||| ||| ||| |||||| |||||||||| ||||| ||||| ||||||    
T  49634128 gaattgattctaacttgaagctaggatttgtagcttttgcctctaaatgtgattattacactcaagtttattattcaactcact 49634045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 3845274 - 3845210
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    ||||||||||||||||||| | |||||||||| |||||||||  || ||||||||||||||||||    
T  3845274 aaaattgattctagaggtgtagaattgattttgacatgtttgtttgatctcaagtagaattgatt 3845210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 52925773 - 52925714
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaat 203  Q
    ||||||||||||||||||| |||||||||||| |||||||||| || ||||| |||||||    
T  52925773 aaaattgattctagaggtgtataattgattttgacatgtttggttgctctcacgtagaat 52925714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 268
Target Start/End: Original strand, 49891284 - 49891334
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaattt 268  Q
    |||||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  49891284 agctaggatttgtagcatttgactctaaatgtgatttttacactcaaattt 49891334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 2410070 - 2410026
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  2410070 aatttattttgacatgtttggatgttctcaagtagaattgatttt 2410026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 12674936 - 12675002
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||||| |||||| | |||||||  |||||||||||| |||| ||||||||| ||||||||    
T  12674936 aaaattgattctggaggtgtagaattgatcctaacatgtttggttgttttcaagtagagttgatttt 12675002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 54596741 - 54596805
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    |||||| ||| |||||||| | |||||||| | |||||||||| |||| ||||||||||||||||    
T  54596741 aaaattaattttagaggtgtaaaattgattatgacatgtttggttgttttcaagtagaattgatt 54596805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 43965629 - 43965700
Alignment:
Q  199 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    |||||||||||||||||  ||||||||||| ||| ||||| || | ||||| | ||||||||||||| ||||    
T  43965629 agaattgattttaacttgaagctaggatttatagtttttgccttcgaacgtaaattttacactcaaaattat 43965700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 283
Target Start/End: Complemental strand, 35253507 - 35253473
Alignment:
Q  249 tgatttttacactcaaatttatcattcatctcact 283  Q
    |||||||||||||||||||||||||||| ||||||    
T  35253507 tgatttttacactcaaatttatcattcaactcact 35253473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 283
Target Start/End: Original strand, 190852 - 190905
Alignment:
Q  230 tagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcact 283  Q
    ||||||||| |||||||| |||||||| |||||||||||||  |||| ||||||    
T  190852 tagcttttgcctccaaacatgatttttgcactcaaatttattgttcaactcact 190905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 38332698 - 38332657
Alignment:
Q  145 aaattgattctagaggtggataattgattttaacatgtttgg 186  Q
    |||||||||||||| ||| |||||||||||| ||||||||||    
T  38332698 aaattgattctagatgtgtataattgattttgacatgtttgg 38332657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 169 - 210
Target Start/End: Complemental strand, 41115499 - 41115458
Alignment:
Q  169 tgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||| ||||||||||||||| | ||||||||||||||||    
T  41115499 tgattttgacatgtttggatgttttaaagtagaattgatttt 41115458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 257
Target Start/End: Original strand, 29064042 - 29064106
Alignment:
Q  193 tcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgattttta 257  Q
    |||||||||||||||| ||||||| |  || ||||| || ||||||||| ||||| |||||||||    
T  29064042 tcaagtagaattgattctaacttaaaaatatgatttataacttttgacttcaaacatgattttta 29064106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 32523408 - 32523360
Alignment:
Q  221 taggatttgtagcttttgactccaaacgtgatttttacactcaaattta 269  Q
    ||||||||||||||||||| || |||  |||||||||||| ||||||||    
T  32523408 taggatttgtagcttttgattctaaaattgatttttacacacaaattta 32523360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 33548188 - 33548232
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||| ||||||||||||| | | ||||||||||||||||    
T  33548188 aattgattttgacatgtttggatgctattaagtagaattgatttt 33548232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 43987692 - 43987648
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||| |||||||||||||||||  |||| ||||||||||    
T  43987692 aattgattttgacatgtttggatgttcttgagtacaattgatttt 43987648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 8e-27; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 17862453 - 17862570
Alignment:
Q  151 attctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtg 250  Q
    ||||||||||   |||||| |||||||||| |||| |||||||||||||||||||||||||||||  |||||  || |||||||||||| | ||||||||    
T  17862453 attctagaggcatataattaattttaacatatttgaatgttctcaagtagaattgattttaacttgaagctataatatgtagcttttgaattcaaacgtg 17862552  T
Q  251 atttttacactcaaattt 268  Q
    ||||| ||||||||||||    
T  17862553 attttcacactcaaattt 17862570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 147 - 241
Target Start/End: Original strand, 1102077 - 1102171
Alignment:
Q  147 attgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgact 241  Q
    |||||||||||||| | |||||||||||| || ||||| | |||||| |||||||||||||||||||||  ||||||||||||||||||||||||    
T  1102077 attgattctagaggggtataattgattttgacgtgtttaggtgttctgaagtagaattgattttaacttgaagctaggatttgtagcttttgact 1102171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 1105366 - 1105428
Alignment:
Q  148 ttgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||| |||||||||||| |||| ||||| |||||||||||||||||||||||    
T  1105366 ttgattctagaggtgtataattgattttgacatttttggctgttctcaagtagaattgatttt 1105428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 238
Target Start/End: Complemental strand, 7328784 - 7328690
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttg 238  Q
    |||||||||| | |||||| |||||||||||| |||||| |||||||| |||| ||||||||||| ||||||  |||||| ||||| | ||||||    
T  7328784 aaaattgatttttgaggtgtataattgatttttacatgtctggatgttttcaaatagaattgattctaacttgaagctagaatttgaaacttttg 7328690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 283
Target Start/End: Complemental strand, 42439707 - 42439623
Alignment:
Q  199 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcact 283  Q
    |||||||||| ||||||  |||||| || |||||||||||| || |||||||||||||||||| || |||||| |||| ||||||    
T  42439707 agaattgattctaacttgaagctagaatctgtagcttttgagtctaaacgtgatttttacactaaattttatcgttcaactcact 42439623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 269
Target Start/End: Original strand, 29923236 - 29923307
Alignment:
Q  198 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattta 269  Q
    ||||||||||| ||||||  ||||| ||||||| | |||| |||| ||||||||||||||||||||||||||    
T  29923236 tagaattgattctaacttgaagctaagatttgtcgtttttaactcaaaacgtgatttttacactcaaattta 29923307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 34195204 - 34195274
Alignment:
Q  196 agtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatt 267  Q
    |||| |||||||||||||||  |||||||||||||| ||||| ||||||||||||| ||| |||||||||||    
T  34195204 agtataattgattttaactttaagctaggatttgtatcttttaactccaaacgtga-tttaacactcaaatt 34195274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 270
Target Start/End: Complemental strand, 10859983 - 10859857
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactcc 243  Q
    |||||| ||| |||||||| | || ||||||| || |||||| ||||||||  |||||||||||| ||||||  |||||| ||||| |||||||| |||     
T  10859983 aaaattcattatagaggtgtagaaatgattttgacctgtttgaatgttctcgggtagaattgattctaacttgaagctagaatttggagcttttgcctca 10859884  T
Q  244 aaacgtgatttttacactcaaatttat 270  Q
    | |  |||||||||  |||||||||||    
T  10859883 acatttgatttttaacctcaaatttat 10859857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 13224780 - 13224715
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||||||||| || |||||||||||| |||||||||||||||| | |||| ||||||||||    
T  13224780 aaaattgattctagagatgtataattgattttgacatgtttggatgttc-cgagtataattgatttt 13224715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 155 - 209
Target Start/End: Original strand, 35439049 - 35439103
Alignment:
Q  155 tagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattt 209  Q
    |||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||    
T  35439049 tagaggtgaataattgattttaacatgtttggatgtcctcaagtggaatttattt 35439103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 260
Target Start/End: Original strand, 38592175 - 38592269
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacac 260  Q
    ||||||| || | |||||||| || |||||||||||||||||| ||| ||  ||| || ||||||||||||||| || ||| |||||||||||||    
T  38592175 aattgatattgatatgtttggttgctctcaagtagaattgattctaatttgaagccagaatttgtagcttttgagtctaaatgtgatttttacac 38592269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 283
Target Start/End: Complemental strand, 12433044 - 12432959
Alignment:
Q  198 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcact 283  Q
    |||||| |||| ||||||  |||||||||||||| || ||||||| ||||||||||| ||||| |||||||||  |||| ||||||    
T  12433044 tagaatggattctaacttgaagctaggatttgtatctgttgactcaaaacgtgatttctacacacaaatttattgttcaactcact 12432959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 38045394 - 38045438
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||| ||||||||| ||||||||||||||||||||||||    
T  38045394 aattgattttgacatgtttgaatgttctcaagtagaattgatttt 38045438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 29922817 - 29922883
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||  ||| | |||||||||| |||||||||| ||||||| || ||||||||||||    
T  29922817 aaaattgattctagtagtgtagaattgattttgacatgtttggttgttctcgagcagaattgatttt 29922883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 259
Target Start/End: Complemental strand, 3970471 - 3970430
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttaca 259  Q
    |||||||| ||||||||||||||||||||| |||||||||||    
T  3970471 agctaggaattgtagcttttgactccaaacttgatttttaca 3970430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 12208985 - 12208944
Alignment:
Q  164 ataattgattttaacatgtttggatgttctcaagtagaattg 205  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  12208985 ataattgattttgacatgtttggatgttctcgagtagaattg 12208944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 14670941 - 14670997
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtag 200  Q
    ||||||||||| ||||||  | |||||||||||||||||||||||  ||||||||||    
T  14670941 aaaattgattcaagaggtatagaattgattttaacatgtttggatactctcaagtag 14670997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 39097188 - 39097251
Alignment:
Q  145 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    ||||||||| |||||||| | |||||||||| |||||||||| || | ||| ||||||||||||    
T  39097188 aaattgattatagaggtgtagaattgattttgacatgtttggttggtttcaggtagaattgatt 39097251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 276
Target Start/End: Original strand, 6413959 - 6414036
Alignment:
Q  198 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 276  Q
    ||||||||||| ||||||  | ||| ||||| |||| |||||||||||| || ||||||||| |||||||||| |||||    
T  6413959 tagaattgattataacttcaaactatgattt-tagcatttgactccaaatgtaatttttacattcaaatttattattca 6414036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 3043166 - 3043126
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgttt 184  Q
    ||||||||||||||||||| | |||||||||| ||||||||    
T  3043166 aaaattgattctagaggtgtagaattgattttgacatgttt 3043126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 18637225 - 18637289
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    ||||||||||||| ||||| | ||||||||   |||||||||| || | ||||||||||||||||    
T  18637225 aaaattgattctaaaggtgaacaattgattcctacatgtttggttgctttcaagtagaattgatt 18637289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Complemental strand, 42194602 - 42194550
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    ||||||| |||||||||||||| || ||| ||| |||||||||| ||||||||    
T  42194602 agctaggttttgtagcttttgagtctaaatgtggtttttacactgaaatttat 42194550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 18349772 - 18349841
Alignment:
Q  201 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    |||||||||||| ||  || |||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  18349772 aattgattttaatttgaagttagggtttgtagcttttgacttcaaacgtgatttttacactcaaatttat 18349841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 48917471 - 48917578
Alignment:
Q  169 tgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattt 268  Q
    ||||||| || ||||||| || |||||||||||||||||| |||| || ||||||||||| | |||||||| || |||| |||||| || ||| ||||||    
T  48917471 tgattttgacgtgtttggctgctctcaagtagaattgattctaacgtaaagctaggatttattgcttttgagtctaaacatgatttctaaactaaaattt 48917570  T
Q  269 atcattca 276  Q
    ||| ||||    
T  48917571 atcgttca 48917578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 19098556 - 19098498
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 276  Q
    ||||| ||||||||| ||||| |||||||| | ||||||||||||||||||||||||||    
T  19098556 agctaagatttgtagtttttgcctccaaacataatttttacactcaaatttatcattca 19098498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 270
Target Start/End: Complemental strand, 38123810 - 38123685
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactcc 243  Q
    |||||||||||||||| || | ||||||||||||||||||||| |  | | |||||||||||||| | ||||  |||||| | ||||||||| | | ||     
T  38123810 aaaattgattctagagatgtagaattgattttaacatgtttggttcctataaagtagaattgattct-acttgaagctagaaattgtagcttctaattct 38123712  T
Q  244 aaacgtgatttttacactcaaatttat 270  Q
    | |  ||||||||||||||||||||||    
T  38123711 agaattgatttttacactcaaatttat 38123685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 45369085 - 45369151
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||  ||||||| | | |||||||| | ||||||||||||||||||||||||||||||||    
T  45369085 aaaattgatttcagaggtgtagatttgattttgagatgtttggatgttctcaagtagaattgatttt 45369151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 12306658 - 12306723
Alignment:
Q  145 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||| ||| ||||||||| | |||||||||| |||||||||| || ||||||||||||||||||||    
T  12306658 aaatggatcctagaggtgtagaattgattttgacatgtttggttgctctcaagtagaattgatttt 12306723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 45821796 - 45821721
Alignment:
Q  172 ttttaacatgtttggatgttct-caagtagaattgattttaacttagagctaggatttgtagcttttgactccaaa 246  Q
    |||||||||||||||||||| | | ||||||||||||||||  ||  ||||| |||||||||||||||| ||||||    
T  45821796 ttttaacatgtttggatgtttttccagtagaattgattttaggttgaagctatgatttgtagcttttgattccaaa 45821721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 45004908 - 45004974
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||||||| | |||||||||| |||||||||| |  |||| |||| ||||||||||    
T  45004908 aaaattgattctagaggtgtagaattgattttgacatgtttggttactctctagtataattgatttt 45004974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 883377 - 883441
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    ||||||||||||||||||| | | |||||||| |||| |||| |||||||| | |||||||||||    
T  883377 aaaattgattctagaggtgtagagttgattttgacatatttgcatgttctccaatagaattgatt 883441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 1242706 - 1242770
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    ||||||||||||||||||| | | |||||||| |||| |||| |||||||| | |||||||||||    
T  1242706 aaaattgattctagaggtgtagagttgattttgacatatttgcatgttctccaatagaattgatt 1242770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 21436155 - 21436095
Alignment:
Q  151 attctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 211  Q
    |||||||| ||| |||||||||||| ||||||||  |||||||| ||||||||| ||||||    
T  21436155 attctagaagtgtataattgattttgacatgttttaatgttctcgagtagaatttatttta 21436095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 48290336 - 48290380
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||| ||||||||||||||| ||||| ||||||||||||    
T  48290336 aattgattttgacatgtttggatgttttcaagcagaattgatttt 48290380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 33504554 - 33504503
Alignment:
Q  188 tgttctcaagtagaattgattttaacttagagctaggatttgtagcttttga 239  Q
    ||||||| ||||||| ||||| ||||||| |||||| |||||||||||||||    
T  33504554 tgttctcgagtagaagtgattataacttaaagctagaatttgtagcttttga 33504503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 47306766 - 47306691
Alignment:
Q  201 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 276  Q
    |||| ||| ||||||| |||||||||||||||||||  ||||||||||| ||||  ||||||  |||||| |||||    
T  47306766 aattaattctaacttacagctaggatttgtagctttaaactccaaacgtaatttacacactcggatttatgattca 47306691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 15050215 - 15050281
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||| ||| | |||||||||| || ||||||| |  ||||| ||||||||||||||    
T  15050215 aaaattgattctagaagtgaagaattgattttgacctgtttggttactctcatgtagaattgatttt 15050281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 12306902 - 12306966
Alignment:
Q  146 aattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||| | |||||| | |||||||||| |||||||||| || |||  |||||||||||||||    
T  12306902 aattgattttggaggtgcaaaattgattttgacatgtttggttgctcttgagtagaattgatttt 12306966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 270
Target Start/End: Original strand, 48832907 - 48832956
Alignment:
Q  221 taggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  48832907 taggatttgtagcttttgactccaaatgtgatttttacactcaaatttat 48832956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 166 - 270
Target Start/End: Original strand, 1233268 - 1233371
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaa 265  Q
    ||||||||||   ||||||| |||||||  | ||||||||||| ||| ||| ||||||||||||||||||||| |||  ||| |||||||||||||||||    
T  1233268 aattgattttggtatgtttgaatgttcttgattagaattgattataattta-agctaggatttgtagcttttggctctgaacatgatttttacactcaaa 1233366  T
Q  266 tttat 270  Q
    |||||    
T  1233367 tttat 1233371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 35592491 - 35592562
Alignment:
Q  198 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    ||||||||||| ||||||| ||||||||||| ||||||||||||| |||| | ||||||||||| ||||||||    
T  35592491 tagaattgattctaacttaaagctaggatttttagcttttgactctaaacat-atttttacacttaaatttat 35592562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 215
Target Start/End: Complemental strand, 18325253 - 18325182
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaactt 215  Q
    |||| |||||| ||| ||| | |||||||||| |||||||||||| ||||| ||||||||||||||||||||    
T  18325253 aaaagtgattccagatgtgaagaattgattttgacatgtttggattttctcgagtagaattgattttaactt 18325182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 263
Target Start/End: Original strand, 28024711 - 28024776
Alignment:
Q  198 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactca 263  Q
    |||||||| || ||||||| |||||  |||||||||||| |||||||||| || ||||||||||||    
T  28024711 tagaattggttctaacttaaagctataatttgtagctttcgactccaaacatggtttttacactca 28024776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 11049264 - 11049316
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    |||||||||||||||||||||| || |||  |||||||||||| |||||||||    
T  11049264 agctaggatttgtagcttttgattctaaaattgatttttacacacaaatttat 11049316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 15452431 - 15452475
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||| |||| ||||||||||||| |||||||||||||||    
T  15452431 aattgattttgacatctttggatgttctcgagtagaattgatttt 15452475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 32088713 - 32088669
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||| |||||||||| || ||||||||||||||||||||    
T  32088713 aattgattttgacatgtttggttgctctcaagtagaattgatttt 32088669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 201 - 276
Target Start/End: Complemental strand, 39289351 - 39289276
Alignment:
Q  201 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 276  Q
    |||||||| ||||||  |||||| | || |||||||||| || |||||||||||||||||| ||| ||||| ||||    
T  39289351 aattgattctaacttgaagctagaacttttagcttttgagtcaaaacgtgatttttacactgaaacttatcgttca 39289276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 270
Target Start/End: Complemental strand, 31785122 - 31785072
Alignment:
Q  220 ctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    ||||||| |||||||| | |||||||| |||||| ||||||||||||||||    
T  31785122 ctaggatatgtagcttattactccaaaagtgattgttacactcaaatttat 31785072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 210
Target Start/End: Complemental strand, 48635320 - 48635287
Alignment:
Q  177 acatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||||||||||||||||| ||||    
T  48635320 acatgtttggatgttctcaagtagaattggtttt 48635287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 4458502 - 4458566
Alignment:
Q  147 attgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 211  Q
    |||||||||||||||| |||||||| ||| |||||||||  ||  ||| |||| |||||||||||    
T  4458502 attgattctagaggtgtataattgactttgacatgtttgtttgcactccagtataattgatttta 4458566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 27500299 - 27500351
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    ||||| ||||| ||||||||  |||||||| | ||||||||||||||||||||    
T  27500299 agctaagatttttagcttttccctccaaacattatttttacactcaaatttat 27500351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 9943346 - 9943438
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttt 236  Q
    ||||||||||||  ||||| | ||||||||||||||||||||| || |||||  ||||||||||| || |||  |||||||||||||||||||    
T  9943346 aaaattgattctgaaggtgtaaaattgattttaacatgtttggttgctctcacttagaattgattctagcttgaagctaggatttgtagcttt 9943438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 197 - 276
Target Start/End: Original strand, 44810368 - 44810447
Alignment:
Q  197 gtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 276  Q
    ||||| |||||| ||||||  |||||||||||||||||||||||  ||||| ||||||| ||| ||||||||||||||||    
T  44810368 gtagagttgattctaacttgaagctaggatttgtagcttttgacggcaaacatgattttaacattcaaatttatcattca 44810447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 270
Target Start/End: Original strand, 13246759 - 13246805
Alignment:
Q  224 gatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||    
T  13246759 gatttgtaccttttgattccaaacgtgatttttacactcaaatttat 13246805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 3654980 - 3654918
Alignment:
Q  203 ttgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaa 265  Q
    |||||| ||||||  |||||||||||||| ||||||||||||||| ||||| ||| |||||||    
T  3654980 ttgattctaacttcaagctaggatttgtaccttttgactccaaacatgattcttatactcaaa 3654918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 28028837 - 28028907
Alignment:
Q  199 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattta 269  Q
    |||||||| | ||||||  |||||| ||||||||||||||||| |||| ||||||||||| | ||||||||    
T  28028837 agaattgactataacttgaagctagaatttgtagcttttgactacaaatgtgatttttacgcacaaattta 28028907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 40582672 - 40582714
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttgg 186  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  40582672 aaaattgattctagaggtgtagaattgattttaacatgtttgg 40582714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 37561704 - 37561769
Alignment:
Q  201 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaat 266  Q
    |||||||| ||||||  | ||| |||||||| ||||||||| |||| |||||||||||||||||||    
T  37561704 aattgattctaacttgaaactacgatttgtaccttttgacttcaaatgtgatttttacactcaaat 37561769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 269
Target Start/End: Complemental strand, 37402321 - 37402253
Alignment:
Q  201 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattta 269  Q
    |||||| | ||||||  |||||| ||||||||||||||||| ||||| ||||| ||||||| |||||||    
T  37402321 aattgactctaacttgaagctagaatttgtagcttttgacttcaaacatgattgttacacttaaattta 37402253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 37561632 - 37561695
Alignment:
Q  146 aattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||||| | |||||||||| ||||||||| || | |||||||||| ||||||||    
T  37561632 aattgattctagaggtgtaaaattgattttgacatgtttgaat-tcctcaagtagatttgatttt 37561695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 145 - 208
Target Start/End: Complemental strand, 15928595 - 15928532
Alignment:
Q  145 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    ||||||||||| |||||| | |||||||||| |||||||||| |||| |  |||||||||||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgatt 15928532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 43717265 - 43717355
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagctt 235  Q
    ||||||||||||||| ||| | |||||||||| |||||||||||| ||    ||||||||||||| | ||||  |||||| |||||||||||    
T  43717265 aaaattgattctagatgtgtagaattgattttgacatgtttggatattgattagtagaattgattct-acttgaagctagaatttgtagctt 43717355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 7630359 - 7630405
Alignment:
Q  164 ataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||||| |||||||||| || | ||||||||||||||||||    
T  7630359 ataattgattttgacatgtttggttgctttcaagtagaattgatttt 7630405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 44671056 - 44670990
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||||| | | ||||| ||||  ||||||||  |||||| ||||||||||||||||    
T  44671056 aaaattgattctagaggggtagaattgcttttggcatgtttgattgttctaaagtagaattgatttt 44670990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Original strand, 13238814 - 13238879
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcact 283  Q
    |||||||||||||||||||   |||||||| ||  ||||||||||||||||||  |||| ||||||    
T  13238814 agctaggatttgtagctttaacctccaaacatggattttacactcaaatttatttttcaactcact 13238879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 186
Target Start/End: Complemental strand, 37420358 - 37420317
Alignment:
Q  145 aaattgattctagaggtggataattgattttaacatgtttgg 186  Q
    |||||||||||||||||| | |||||||||| ||||||||||    
T  37420358 aaattgattctagaggtgtagaattgattttgacatgtttgg 37420317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 43501088 - 43501160
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttga 239  Q
    |||||||| | |||||||||| || | |||||||||||||||| | ||||  | ||||||||||||||||||||    
T  43501088 aattgattctgacatgtttggttgctttcaagtagaattgattct-acttgaaactaggatttgtagcttttga 43501160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 184
Target Start/End: Complemental strand, 16013873 - 16013833
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgttt 184  Q
    |||||| |||||||||||| | |||||||||||||||||||    
T  16013873 aaaatttattctagaggtgtagaattgattttaacatgttt 16013833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 29823529 - 29823569
Alignment:
Q  224 gatttgtagcttttgactccaaacgtgatttttacactcaa 264  Q
    ||||||||||||||||| ||||| ||||||| |||||||||    
T  29823529 gatttgtagcttttgaccccaaatgtgatttctacactcaa 29823569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 283
Target Start/End: Original strand, 44439249 - 44439333
Alignment:
Q  199 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcact 283  Q
    |||||||||| ||||||  |||||  ||||| ||||||||| || |||  ||||||| ||||||||||||||  |||| ||||||    
T  44439249 agaattgattctaacttgaagctaaaatttggagcttttgattctaaaattgattttaacactcaaatttattgttcaactcact 44439333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 29240614 - 29240547
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 211  Q
    ||||||||||||||||||| | |||||||||| ||||||| |||| || |||||||||||||||||||    
T  29240614 aaaattgattctagaggtgtaaaattgattttgacatgttaggatattttcaagtagaattgatttta 29240547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 33136645 - 33136578
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 211  Q
    |||||| |||||||||||| |||||||||||| |||||||||| || |||| |||| |||||||||||    
T  33136645 aaaattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgatttta 33136578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 7262994 - 7263060
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||| ||| | |||||||||| |||| || |||||||||| |||| ||||||||||    
T  7262994 aaaattgattctagaagtgtagaattgattttgacattttaggatgttctcgagtataattgatttt 7263060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 26550442 - 26550508
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||| ||||| |||||||| | |||||||||| |||||||||| ||| ||||| |||||||||||||    
T  26550442 aaaaatgattatagaggtgtagaattgattttgacatgtttggttgtactcaactagaattgatttt 26550508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 255
Target Start/End: Original strand, 25195580 - 25195632
Alignment:
Q  203 ttgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttt 255  Q
    |||||| ||||||  | ||||||| ||||||||||||||||||||||||||||    
T  25195580 ttgattctaacttgaaactaggatctgtagcttttgactccaaacgtgatttt 25195632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 211
Target Start/End: Complemental strand, 33141869 - 33141802
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttta 211  Q
    ||||||||||||||  ||| | |||||||||| | |||||||| || ||||||||| |||||||||||    
T  33141869 aaaattgattctagcagtgtaaaattgattttgatatgtttggttgctctcaagtataattgatttta 33141802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 5724792 - 5724726
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||| |||||||| ||| | |||||||| | ||||||||||||| | ||| ||||||||||||||    
T  5724792 aaaattaattctagaagtgtagaattgattctgacatgtttggatgctttcaggtagaattgatttt 5724726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 9604438 - 9604500
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattga 206  Q
    ||||||||||||||| ||  | |||| ||||||||||||||||| |||  |||||||||||||    
T  9604438 aaaattgattctagacgtatagaatttattttaacatgtttggacgtttccaagtagaattga 9604500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 10400858 - 10400816
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttgg 186  Q
    ||||||||||||||||||| |||||||||||| | ||||||||    
T  10400858 aaaattgattctagaggtgtataattgattttgatatgtttgg 10400816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 208
Target Start/End: Original strand, 6653736 - 6653796
Alignment:
Q  148 ttgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    |||||||| | |||| |||||||||||| || ||||||| || | ||||||||||||||||    
T  6653736 ttgattctggcggtgtataattgattttgacttgtttggttgctgtcaagtagaattgatt 6653796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 270
Target Start/End: Original strand, 13687590 - 13687658
Alignment:
Q  202 attgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    ||||||| ||||||  || ||||| ||||||||| || |||||||  ||||||| ||||||||||||||    
T  13687590 attgattctaacttgaagataggacttgtagcttctgtctccaaatatgattttcacactcaaatttat 13687658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 30926941 - 30926881
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaatt 204  Q
    ||||||||||||||| ||| ||||||| |||| ||||||||||  | |||| |||||||||    
T  30926941 aaaattgattctagaagtgtataattgcttttgacatgtttggtcgctctcgagtagaatt 30926881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 23664 - 23599
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcact 283  Q
    |||||||||||||||||||||| || | |||||||||||| ||| |||||||||||||| ||||||    
T  23664 agctaggatttgtagcttttgaatctagacgtgatttttagactaaaatttatcattcaactcact 23599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 11038105 - 11038155
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctc 194  Q
    ||||||||||||||||||  |||||||||||| ||||||||||||||||||    
T  11038105 aaaattgattctagaggtatataattgattttgacatgtttggatgttctc 11038155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 41614767 - 41614833
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||||||  | |||||||||| || |||||||||| | ||||||||||||||||||    
T  41614767 aaaattgattctagaggtataaaattgattttgacttgtttggatggtttcaagtagaattgatttt 41614833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 11791804 - 11791753
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaattta 269  Q
    |||||||||||||||||||||| ||  ||||||||||||||||| |||||||    
T  11791804 agctaggatttgtagcttttgagtctcaacgtgatttttacactaaaattta 11791753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 193
Target Start/End: Original strand, 23979257 - 23979304
Alignment:
Q  146 aattgattctagaggtggataattgattttaacatgtttggatgttct 193  Q
    ||||||||||||||||| | |||| |||||||||||||||||||||||    
T  23979257 aattgattctagaggtgtaaaattaattttaacatgtttggatgttct 23979304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 256
Target Start/End: Complemental strand, 39648430 - 39648372
Alignment:
Q  198 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgattttt 256  Q
    ||||| ||||| ||||||  |||||||||||||||||||||||||||||| || |||||    
T  39648430 tagaactgattctaactttaagctaggatttgtagcttttgactccaaacttggttttt 39648372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 8252721 - 8252785
Alignment:
Q  145 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||||||||||| | || ||||||| |||||||||| |||| | ||||||||||||||||    
T  8252721 aaattgattctagaggtgtagaactgattttgacatgtttggctgtt-ttaagtagaattgatttt 8252785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 13929849 - 13929808
Alignment:
Q  164 ataattgattttaacatgtttggatgttctcaagtagaattg 205  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  13929849 ataattgattttgacatgtttggatgttctcgagtagaattg 13929808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 283
Target Start/End: Original strand, 32837401 - 32837483
Alignment:
Q  202 attgattttaacttagagctaggatttgtagcttttgactccaaacgtgattt-ttacactcaaatttatcattcatctcact 283  Q
    |||||||||||| || |||||||||||||| | |||| |||||||| || ||| ||||| ||||||||||  |||| ||||||    
T  32837401 attgattttaacctaaagctaggatttgtatcctttgcctccaaacttgttttcttacattcaaatttattgttcaactcact 32837483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 39648307 - 39648265
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttgg 186  Q
    |||||||||||||||| || |||||||||||| ||||||||||    
T  39648307 aaaattgattctagagatgtataattgattttgacatgtttgg 39648265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 1836300 - 1836231
Alignment:
Q  201 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    |||||||| ||||||  ||||||||| ||||||||||||   |||| ||||| ||||||||||| |||||    
T  1836300 aattgattctaacttgaagctaggatgtgtagcttttgaaagcaaaagtgatatttacactcaagtttat 1836231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 283
Target Start/End: Complemental strand, 26100217 - 26100152
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcact 283  Q
    |||||||||||||||||||||| || | |  |||||||||||| |||||||||  |||| ||||||    
T  26100217 agctaggatttgtagcttttgattctataattgatttttacacacaaatttatggttcaactcact 26100152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 34469247 - 34469296
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgattttaactt 215  Q
    |||||||||| |||||||| |||||||||||||| |||| ||||| ||||    
T  34469247 aattgattttgacatgttttgatgttctcaagtataattaattttgactt 34469296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 40881044 - 40881088
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||| ||||||||| | ||||| ||||||||||||||||    
T  40881044 aattgattttgacatgtttgcaagttctaaagtagaattgatttt 40881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 49138997 - 49138933
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    ||||||||||||||||||| | |||||||| | |||||||||| |||| ||||||| ||||||||    
T  49138997 aaaattgattctagaggtgtagaattgattctgacatgtttggttgttttcaagtaaaattgatt 49138933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 43075986 - 43076036
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctc 194  Q
    ||||||||||||||||||| | ||||||||||||||| |||| ||||||||    
T  43075986 aaaattgattctagaggtgcagaattgattttaacatatttgaatgttctc 43076036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 53782576 - 53782673
Alignment:
Q  179 atgtttggatgttctcaagtagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattca 276  Q
    |||||||||| || |  ||||||||||||| ||| ||  ||| ||||||||||| |||||| | ||||| | |||||||||||||||| |||| ||||    
T  53782576 atgtttggatttttttgagtagaattgattctaatttgaagccaggatttgtagattttgatttcaaacataatttttacactcaaatatatctttca 53782673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 265
Target Start/End: Original strand, 29904011 - 29904075
Alignment:
Q  201 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaa 265  Q
    |||||||| ||||||  |||||   |||||| |||||||||||||| ||||||||||||||||||    
T  29904011 aattgattctaacttgaagctatattttgtaacttttgactccaaaagtgatttttacactcaaa 29904075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 208
Target Start/End: Original strand, 8330039 - 8330102
Alignment:
Q  146 aattgattctagaggtggataattga-ttttaacatgtttggatgttctcaagtagaattgatt 208  Q
    ||||||||||||||||| |||||| | |||| |||||||||| || ||||||||| ||||||||    
T  8330039 aattgattctagaggtgaataattaattttttacatgtttggttgctctcaagtaaaattgatt 8330102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 22683859 - 22683930
Alignment:
Q  199 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    |||||| ||| ||||||  ||||| ||| |||||||||||| || |||||||||||||||| | ||||||||    
T  22683859 agaattaattataacttgaagctatgatctgtagcttttgagtctaaacgtgatttttacattgaaatttat 22683930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 26617789 - 26617723
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatg-ttctcaagtagaattgatttt 210  Q
    ||||||||||||||| ||| | |||||||||| ||||||||||||| || |||| |||||||||||||    
T  26617789 aaaattgattctagatgtgtaaaattgattttgacatgtttggatgcttttcaa-tagaattgatttt 26617723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 33560661 - 33560602
Alignment:
Q  198 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgattttta 257  Q
    ||||||||||| ||||  | |||||||||||||||||||||| || ||| ||||||||||    
T  33560661 tagaattgattctaaccgaaagctaggatttgtagcttttgagtctaaaagtgattttta 33560602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 223 - 270
Target Start/End: Complemental strand, 39218527 - 39218480
Alignment:
Q  223 ggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    |||||| ||| ||| ||||||||||||||||||||||||| |||||||    
T  39218527 ggatttatagttttagactccaaacgtgatttttacactcgaatttat 39218480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 2171710 - 2171772
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattga 206  Q
    |||||||||||||||| || | ||||  |||| |||||||||||||||||| |||| ||||||    
T  2171710 aaaattgattctagagttgtagaatttcttttgacatgtttggatgttctcgagtaaaattga 2171772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Complemental strand, 2206506 - 2206440
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||||||||||||   || ||| ||||||||||||| |||||||  || ||||||||||||    
T  2206506 aaaattgattctagaggtgctgaaatgaatttaacatgtttgaatgttctagagcagaattgatttt 2206440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 283
Target Start/End: Original strand, 4014165 - 4014247
Alignment:
Q  201 aattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttatcattcatctcact 283  Q
    |||||||| ||||||  ||||| |||||  | ||||||||||||||||| ||||||||| | ||||||||  |||| ||||||    
T  4014165 aattgattctaacttgaagctatgatttaaatcttttgactccaaacgtaatttttacagtaaaatttatggttcaactcact 4014247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 261
Target Start/End: Complemental strand, 11271627 - 11271565
Alignment:
Q  199 agaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacact 261  Q
    |||||||||| ||||||  |||||||||||||||||||||| || |||| ||| |||| ||||    
T  11271627 agaattgattctaacttgaagctaggatttgtagcttttgagtctaaacatgacttttgcact 11271565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 20712573 - 20712639
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||||||  | |||||||||| ||||| |||  || |||||| |||||||||||||    
T  20712573 aaaattgattctagaggtttagaattgatttttacatgcttgtttgctctcaaatagaattgatttt 20712639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 39672872 - 39672941
Alignment:
Q  198 tagaattgattttaacttagagctaggatttgtagcttttgactccaaacgtgatttttacactcaaattt 268  Q
    ||||||||||| |||||| ||| |||| |||||||||||||||| | ||| |||||| |||||| ||||||    
T  39672872 tagaattgattataacttggagttagggtttgtagcttttgact-ctaacatgatttatacacttaaattt 39672941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 41058850 - 41058915
Alignment:
Q  145 aaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||||| ||| | | |||||||| | ||||||||||||||| || |||| ||||||||||    
T  41058850 aaattgattctaaaggagtagaattgattgtgacatgtttggatgttttcgagtaaaattgatttt 41058915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 47179609 - 47179568
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttg 185  Q
    |||||||||| ||||| || ||||||||||||||||||||||    
T  47179609 aaaattgattttagagatgtataattgattttaacatgtttg 47179568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 228
Target Start/End: Complemental strand, 53159180 - 53159095
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagta-gaattgattttaacttagagctaggattt 228  Q
    ||||||||||||||||||| | || ||||||| | ||| |||| || ||||||||| ||||||||| ||| || ||||||| ||||    
T  53159180 aaaattgattctagaggtgtaaaactgattttgatatgcttggctgatctcaagtaggaattgattctaaattggagctagaattt 53159095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 472026 - 471962
Alignment:
Q  148 ttgattctagaggtggataattgatttta-acatgtttggatgttctcaagtagaattgatttta 211  Q
    ||||||||||| ||| | ||||||||||  ||||||||| ||||| || ||||||||||||||||    
T  472026 ttgattctagaagtgtagaattgatttttgacatgtttgaatgttgtcgagtagaattgatttta 471962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 215
Target Start/End: Complemental strand, 2206836 - 2206792
Alignment:
Q  171 attttaacatgtttggatgttctcaagtagaattgattttaactt 215  Q
    ||||||||||| || ||||||||| ||||||||||||| ||||||    
T  2206836 attttaacatgctttgatgttctcgagtagaattgattctaactt 2206792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 210
Target Start/End: Original strand, 25318743 - 25318806
Alignment:
Q  146 aattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||||||||||||||| |||||||| ||| |||||||  |||||| |  |||||||||||||||    
T  25318743 aattgattctagaggtgtataattga-tttgacatgttaagatgtttttgagtagaattgatttt 25318806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 166 - 210
Target Start/End: Original strand, 25318992 - 25319036
Alignment:
Q  166 aattgattttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    |||||||||| |||||||||| || |||| |||||||||||||||    
T  25318992 aattgattttgacatgtttggttgctctcgagtagaattgatttt 25319036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 43628132 - 43628184
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttacactcaaatttat 270  Q
    ||||| ||||||||| |||||||||||||| ||||||| ||| | ||||||||    
T  43628132 agctaagatttgtagattttgactccaaacatgattttaacatttaaatttat 43628184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 46978294 - 46978334
Alignment:
Q  218 agctaggatttgtagcttttgactccaaacgtgatttttac 258  Q
    |||||||||||||| ||||||| |||||| |||||||||||    
T  46978294 agctaggatttgtaccttttgaatccaaatgtgatttttac 46978334  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 55085164 - 55085104
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaatt 204  Q
    ||||||||||||||||||  | |||||||||||||||||| || || | |||| |||||||    
T  55085164 aaaattgattctagaggtatagaattgattttaacatgttagggtgatgtcaactagaatt 55085104  T

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Target: scaffold0393 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 210
Target Start/End: Complemental strand, 12442 - 12403
Alignment:
Q  171 attttaacatgtttggatgttctcaagtagaattgatttt 210  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  12442 attttgacatgtttggatgttctcaagtagaattgatttt 12403  T

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Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 31749 - 31813
Alignment:
Q  144 aaaattgattctagaggtggataattgattttaacatgtttggatgttctcaagtagaattgatt 208  Q
    ||||||||||||||||||| | |||||||| | |||||||||| |||| || |||| ||||||||    
T  31749 aaaattgattctagaggtgtagaattgattctgacatgtttggttgttgtcgagtaaaattgatt 31813  T

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