View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16503_low_24 (Length: 268)

Name: NF16503_low_24
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16503_low_24
NF16503_low_24
[»] chr4 (8 HSPs)
chr4 (2-255)||(24754736-24754986)
chr4 (171-255)||(24746700-24746785)
chr4 (4-105)||(16652471-16652571)
chr4 (13-105)||(24843719-24843811)
chr4 (13-103)||(24760350-24760440)
chr4 (13-105)||(24840261-24840353)
chr4 (57-103)||(12373739-12373785)
chr4 (60-104)||(24577489-24577533)
[»] scaffold1886 (1 HSPs)
scaffold1886 (63-105)||(1226-1268)
[»] chr7 (1 HSPs)
chr7 (48-96)||(16305196-16305244)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 255
Target Start/End: Complemental strand, 24754986 - 24754736
Alignment:
Q  2 caagaacatatttattaaactcggtcctgatgctacaatttcagagcttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaaca 101  Q
    |||||||||||| |||||| |||||||||||| |||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24754986 caagaacatatt-attaaattcggtcctgatgttacaatatcagagcctaaaactcaatttaaatataaacaacaatccaccaaactttaaagaacaaca 24754888  T
Q  102 taatgaaaataactatctgctttact--ctcttacactaaaggaaggaagctaagaaaggaaactaattaagttcagggacaagagacgcctacaccatc 199  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||    
T  24754887 taatgaaaataactatctcctttactctctcttacactaaaggaaggaagctaagaaaggaaac----taagttcagggacaagagacgcctacaccatc 24754792  T
Q  200 agtcgtcaacatgacactggttttggatgatatttattctaaatcttcaagatatt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  24754791 agtcgtcaacatgacactggttttggatgatatttattctaaatctttaaggtatt 24754736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 171 - 255
Target Start/End: Complemental strand, 24746785 - 24746700
Alignment:
Q  171 gttcagggacaagagacgcctacaccatcagtcgtcaacatgacact-ggttttggatgatatttattctaaatcttcaagatatt 255  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||| ||||    
T  24746785 gttcagggacaagagacgcctacaccatcaatcgtcaacatgacactgggttttggatgatatttactctaaatcttcaaggtatt 24746700  T

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Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 16652571 - 16652471
Alignment:
Q  4 agaacatatttattaaactcggtcctgatgctacaatttcagagcttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaacata 103  Q
    |||||||||| |||||||||   |||||||  ||||| ||||||| || |||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  16652571 agaacatatt-attaaactcaaccctgatgtcacaatatcagagcctagaactcaatttaaacataaacaataatccaacaaactttaaagaacaacata 16652473  T
Q  104 at 105  Q
    ||    
T  16652472 at 16652471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 24843811 - 24843719
Alignment:
Q  13 ttattaaactcggtcctgatgctacaatttcagagcttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaacataat 105  Q
    ||||||||||||||||| |||  ||||  ||||||| || ||||||||||||||||| |||| |||||| |||||||||||||||||||||||    
T  24843811 ttattaaactcggtcctaatgtcacaacatcagagcctagaactcaatttaaacatacacaataatccaacaaactttaaagaacaacataat 24843719  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 103
Target Start/End: Complemental strand, 24760440 - 24760350
Alignment:
Q  13 ttattaaactcggtcctgatgctacaatttcagagcttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaacata 103  Q
    |||||||||||  | ||||||  ||||| ||||||  || |||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  24760440 ttattaaactcaatactgatgtcacaatatcagaggatagaactcaatttaaacataaacaataatccaacaaactttaaagaacaacata 24760350  T

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Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 24840353 - 24840261
Alignment:
Q  13 ttattaaactcggtcctgatgctacaatttcagagcttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaacaacataat 105  Q
    |||||||||||||||||||||  || |  ||||||| || |||| |||| ||||||| |||| |||||| |||||||||||||||||||||||    
T  24840353 ttattaaactcggtcctgatgtcacgacatcagagcctagaacttaattgaaacatacacaataatccaacaaactttaaagaacaacataat 24840261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Complemental strand, 12373785 - 12373739
Alignment:
Q  57 caatttaaacataaacaacaatccaccaaactttaaagaacaacata 103  Q
    |||||||||||||||||| |||||| |||| ||||||||| ||||||    
T  12373785 caatttaaacataaacaataatccaacaaattttaaagaaaaacata 12373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 24577489 - 24577533
Alignment:
Q  60 tttaaacataaacaacaatccaccaaactttaaagaacaacataa 104  Q
    |||||||||||| ||||||||| ||||| || |||||||||||||    
T  24577489 tttaaacataaataacaatccaacaaacattcaagaacaacataa 24577533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1886 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1886
Description:

Target: scaffold1886; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Complemental strand, 1268 - 1226
Alignment:
Q  63 aaacataaacaacaatccaccaaactttaaagaacaacataat 105  Q
    ||||||| |||| |||||| |||||||||||||||||||||||    
T  1268 aaacatacacaataatccaacaaactttaaagaacaacataat 1226  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 96
Target Start/End: Complemental strand, 16305244 - 16305196
Alignment:
Q  48 cttaaaactcaatttaaacataaacaacaatccaccaaactttaaagaa 96  Q
    |||||||| |||||||||||||||||  ||| || ||||||||||||||    
T  16305244 cttaaaacacaatttaaacataaacatgaatacaacaaactttaaagaa 16305196  T

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