View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16503_low_26 (Length: 232)
Name: NF16503_low_26
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 218
Target Start/End: Complemental strand, 22380270 - 22380069
Alignment:
| Q |
17 |
catgatcatcaccatgcttttataatattttcttacatgtattaggaaatattcacttataattcttgaagaaaacataattgaattcatgcagcaatca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22380270 |
catgatcatcaccatgcttttataatattttcttacatgtattaggaaatattcacttataattcttgaagaaaacataattgaattcatgcagcaatca |
22380171 |
T |
|
| Q |
117 |
ctttatcatataataaaggatcatactatttatcagtcaccaacatcaaacctagaaatctttatgacactacctgatcttatttatctcaatcctcttt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22380170 |
ctttatcatataataaaggatcatactatttatcagtcaccaacatcaaacctagaaatctttatgacactacctgatcttatttatctcaatcctcttt |
22380071 |
T |
|
| Q |
217 |
gc |
218 |
Q |
| |
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|| |
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|
| T |
22380070 |
gc |
22380069 |
T |
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