View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16503_low_29 (Length: 208)

Name: NF16503_low_29
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16503_low_29
NF16503_low_29
[»] chr8 (6 HSPs)
chr8 (49-191)||(20226356-20226500)
chr8 (1-48)||(30224423-30224470)
chr8 (1-47)||(5567619-5567665)
chr8 (4-48)||(3375425-3375469)
chr8 (1-48)||(25249199-25249246)
chr8 (4-48)||(6428937-6428981)
[»] chr7 (6 HSPs)
chr7 (49-191)||(44310868-44311012)
chr7 (3-50)||(20046484-20046531)
chr7 (4-48)||(44963359-44963403)
chr7 (1-41)||(4895777-4895817)
chr7 (1-41)||(28124585-28124625)
chr7 (1-41)||(28126412-28126452)
[»] chr6 (4 HSPs)
chr6 (1-48)||(1088644-1088691)
chr6 (1-48)||(5377071-5377118)
chr6 (1-48)||(5378926-5378973)
chr6 (5-41)||(19645298-19645334)
[»] chr4 (5 HSPs)
chr4 (1-48)||(7040554-7040601)
chr4 (1-48)||(18656301-18656348)
chr4 (1-48)||(23564666-23564713)
chr4 (1-46)||(23566363-23566407)
chr4 (1-41)||(52518953-52518993)
[»] chr3 (3 HSPs)
chr3 (1-48)||(1140194-1140241)
chr3 (1-48)||(17402773-17402820)
chr3 (1-48)||(6789813-6789860)
[»] chr2 (1 HSPs)
chr2 (1-48)||(29758313-29758360)
[»] chr1 (2 HSPs)
chr1 (1-48)||(17449503-17449550)
chr1 (1-41)||(16808576-16808616)
[»] scaffold0189 (1 HSPs)
scaffold0189 (1-41)||(19138-19178)


Alignment Details
Target: chr8 (Bit Score: 130; Significance: 1e-67; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 20226356 - 20226500
Alignment:
Q  49 gtgtccatgtcatttgagttgaatctaagtacaaccctacaaaatttatttgcaggctttatttcaccactcaaatgtgaacc--tttccatacaccctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  20226356 gtgtccatgtcatttgagttgaatctaagtacaaccctacaaaatttatttgcaggctttatttcaccactcaaatgtgaaccaatttcaatacaccctc 20226455  T
Q  147 ttaggaccatgattgttgggacaatttgaggtttcatgaaatagt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  20226456 ttaggaccatgattgttgggacaatttgaggtttcatgaaatagt 20226500  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 30224423 - 30224470
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  30224423 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 30224470  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 5567619 - 5567665
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaac 47  Q
    ||||||||||||||||||||||| ||||||||||||||||| |||||    
T  5567619 ttgcttacatctatgacttttctccctatgattccatgatttttaac 5567665  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 3375469 - 3375425
Alignment:
Q  4 cttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    |||||||||||||| ||||| ||||||||||||||||| ||||||    
T  3375469 cttacatctatgacctttctccctatgattccatgattcttaaca 3375425  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 25249199 - 25249246
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    |||||||||| |||||||||||| ||||||||| ||||||| ||||||    
T  25249199 ttgcttacatatatgacttttctccctatgatttcatgattcttaaca 25249246  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 6428937 - 6428981
Alignment:
Q  4 cttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    |||||||||||||||| ||| | ||||||||||||||| ||||||    
T  6428937 cttacatctatgacttctctccttatgattccatgattcttaaca 6428981  T

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Target: chr7 (Bit Score: 130; Significance: 1e-67; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 44310868 - 44311012
Alignment:
Q  49 gtgtccatgtcatttgagttgaatctaagtacaaccctacaaaatttatttgcaggctttatttcaccactcaaatgtgaacc--tttccatacaccctc 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||    
T  44310868 gtgtccatgtcatttgagttgaatctaagtacaaccctacaaaatttatttgcaggctttatttcaccactcaaatgtgaaccaatttcaatacaccctc 44310967  T
Q  147 ttaggaccatgattgttgggacaatttgaggtttcatgaaatagt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  44310968 ttaggaccatgattgttgggacaatttgaggtttcatgaaatagt 44311012  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 20046531 - 20046484
Alignment:
Q  3 gcttacatctatgacttttcttcctatgattccatgattattaacagt 50  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  20046531 gcttacatctatgacttttctccctatgattccatgattcttaacagt 20046484  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 44963359 - 44963403
Alignment:
Q  4 cttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  44963359 cttacatctatgacttttctccctatgattccatgattcttaaca 44963403  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 4895777 - 4895817
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgatt 41  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  4895777 ttgcttacatctatgatctttctccctatgattccatgatt 4895817  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28124625 - 28124585
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgatt 41  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  28124625 ttgcttacatctatgatctttctccctatgattccatgatt 28124585  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28126452 - 28126412
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgatt 41  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  28126452 ttgcttacatctatgatctttctccctatgattccatgatt 28126412  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 1088691 - 1088644
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  1088691 ttgcttacatctatgacttctcttcctatgattccatgattcttaaca 1088644  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5377071 - 5377118
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  5377071 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 5377118  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5378926 - 5378973
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  5378926 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 5378973  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 19645334 - 19645298
Alignment:
Q  5 ttacatctatgacttttcttcctatgattccatgatt 41  Q
    ||||||||||||||||||| |||||||||||||||||    
T  19645334 ttacatctatgacttttctccctatgattccatgatt 19645298  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 7040554 - 7040601
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  7040554 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 7040601  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 18656301 - 18656348
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  18656301 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 18656348  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 23564713 - 23564666
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  23564713 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 23564666  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 23566407 - 23566363
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaa 46  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||    
T  23566407 ttgcttacatctatgacttttc-tcctatgattccatgattcttaa 23566363  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52518953 - 52518993
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgatt 41  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  52518953 ttgcttacatctatgatctttctccctatgattccatgatt 52518993  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1140194 - 1140241
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  1140194 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 1140241  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 17402820 - 17402773
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  17402820 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 17402773  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 6789813 - 6789860
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  6789813 ttgcttacatctatgacttctctccctatgattccatgattcttaaca 6789860  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 29758313 - 29758360
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  29758313 ttgcttacatctatgacttttctccctatgattccatgattcttaaca 29758360  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 17449503 - 17449550
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgattattaaca 48  Q
    ||||||||||||||||| ||||| ||||||||||||||||| ||||||    
T  17449503 ttgcttacatctatgacctttctccctatgattccatgattcttaaca 17449550  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16808616 - 16808576
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgatt 41  Q
    ||||||||||||||||  ||||| |||||||||||||||||    
T  16808616 ttgcttacatctatgatctttctccctatgattccatgatt 16808576  T

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Target: scaffold0189 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 19138 - 19178
Alignment:
Q  1 ttgcttacatctatgacttttcttcctatgattccatgatt 41  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  19138 ttgcttacatctatgatttttctccctatgattccatgatt 19178  T

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