View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16503_low_5 (Length: 551)
Name: NF16503_low_5
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_5 |
 | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 495; Significance: 0; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 16 - 533
Target Start/End: Complemental strand, 675197 - 674679
Alignment:
| Q |
16 |
gtttccacatgtgttgcattatattgtctcaatattttaatttt-gcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctt |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
675197 |
gtttccacatgtgttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctt |
675098 |
T |
|
| Q |
115 |
tttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
675097 |
tttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatg |
674998 |
T |
|
| Q |
215 |
gctgttaaaaaggattatagttttagggccgtggaattttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
674997 |
gctgttaaaaaggattatagttttagggccgtggaattttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggtt |
674898 |
T |
|
| Q |
315 |
cttaatagacaggctaaacttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
674897 |
cttaatagacaggctaaacttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttca |
674798 |
T |
|
| Q |
415 |
ctgtgttattctagtctaatgtgttagtacatcaattgtaaaaaacttgtagttccagcacactgcaatgacaatttgaattcagacatatatacttgaa |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
674797 |
ctgtgttattctagtctaatgtgttagtacatcaattgtaacaaacttgtagttccagcacactgcaatgacaatttgaattcagacatatatacttgaa |
674698 |
T |
|
| Q |
515 |
tttttcggtacattctgtg |
533 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
674697 |
tttttcggtacattctgtg |
674679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 16 - 533
Target Start/End: Complemental strand, 749793 - 749275
Alignment:
| Q |
16 |
gtttccacatgtgttgcattatattgtctcaatattttaatttt-gcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctt |
114 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
749793 |
gtttccacatgtgttgccttatattgtctcaatattttaatttttgtgtgcacctcaagcttcaaaatagacttataacttcgtagttgaaatgtctctt |
749694 |
T |
|
| Q |
115 |
tttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatg |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
749693 |
tttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatg |
749594 |
T |
|
| Q |
215 |
gctgttaaaaaggattatagttttagggccgtggaattttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggtt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
749593 |
gctgttaaaaaggattatagttttagggccgtggaattttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggtt |
749494 |
T |
|
| Q |
315 |
cttaatagacaggctaaacttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttca |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
749493 |
cttaatagacaggctaaacttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttca |
749394 |
T |
|
| Q |
415 |
ctgtgttattctagtctaatgtgttagtacatcaattgtaaaaaacttgtagttccagcacactgcaatgacaatttgaattcagacatatatacttgaa |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
749393 |
ctgtgttattctagtctaatgtgttagtacatcaattgtaacaaacttgtagttccagcacactgcaatgacaatttgaattcagacatatatacttgaa |
749294 |
T |
|
| Q |
515 |
tttttcggtacattctgtg |
533 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
749293 |
tttttcggtacattctgtg |
749275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 17 - 426
Target Start/End: Original strand, 2634173 - 2634581
Alignment:
| Q |
17 |
tttccacatgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttt |
116 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
2634173 |
tttccatatgtgttgccttataatgtctcaatattttaatttttattgcacctcaagcctcaaaatagacttataacatcatagttcaaatgtctctttt |
2634272 |
T |
|
| Q |
117 |
tcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggc |
216 |
Q |
| |
|
||||| |||| |||||||||| ||||||||||||||| |||| ||| |||||| |||||||| ||| || || |||||||||||| ||||||||||||| |
|
|
| T |
2634273 |
tcaggctggttgtgtttgttcgtttcaatagaagggttattctctatctggctgaattgcttcggt--atcttgtggtctggagcggtgctgaagatggc |
2634370 |
T |
|
| Q |
217 |
tgttaaaaaggattatagttttagggccgtggaat-tttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggttc |
315 |
Q |
| |
|
|| ||||||| | ||||||||||| ||||||| ||||||||||||||||||||||||| ||||| || |||| ||||||||||||||| |||| |
|
|
| T |
2634371 |
cgtgaaaaagggtagtagttttagggttgtggaatccccaagttcattttgattatttattatggtgtaaaccttgatgaggtgaaaaaactatatgttc |
2634470 |
T |
|
| Q |
316 |
ttaatagacaggctaaacttgtctctggttttattattatatgttgtttggaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttcac |
415 |
Q |
| |
|
| |||||| ||||||||||| |||| || | |||||| |||||||||||| |||||||||||||||||||||| |||||| ||||||||| ||||||||| |
|
|
| T |
2634471 |
taaatagataggctaaacttttctcgggctgtattataatatgttgtttgtaagaaaatacaatcttcaaagtgtaatatgtttgacttgcatgtttcac |
2634570 |
T |
|
| Q |
416 |
tgtgttattct |
426 |
Q |
| |
|
|||||||||| |
|
|
| T |
2634571 |
cgtgttattct |
2634581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 87 - 346
Target Start/End: Complemental strand, 9564474 - 9564214
Alignment:
| Q |
87 |
ttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcat |
186 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
9564474 |
ttataacgtcatagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcattagaagggttattcactagctggctgaattgcttaggttcat |
9564375 |
T |
|
| Q |
187 |
tttctggtctggagcgttgctgaagatggctgttaaaaaggattatagttttagggccgtggaa-ttttaagttcattttgattatttattatgtagtaa |
285 |
Q |
| |
|
||| |||||||||| |||||||||||||| || ||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||| |||||||||| |
|
|
| T |
9564374 |
tttgtggtctggagtattgctgaagatggcggtgaaaaaggatcgtagttttagggtcgtggaatttttaagtttattttgattatttactatgtagtaa |
9564275 |
T |
|
| Q |
286 |
aactagatggggtgaaaaaactataggttcttaatagacaggctaaacttgtctctggttt |
346 |
Q |
| |
|
||||||||| ||||||||||||||| ||||| ||||||| |||||||||||||||||||| |
|
|
| T |
9564274 |
aactagatgaggtgaaaaaactatatgttctgtatagacaagctaaacttgtctctggttt |
9564214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 2495761 - 2495948
Alignment:
| Q |
29 |
ttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcg |
128 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||| ||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
2495761 |
ttgccttataatgtctcaatatttttattttaattgcacctgaagcctcaaaatagacttataacatcatagttgaaatgtctctttttcaggttggttg |
2495860 |
T |
|
| Q |
129 |
tgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggc |
216 |
Q |
| |
|
||||||||| ||||||||||||||| | || || ||||||| |||| |||||||| |||| ||||||||||| | ||||||||||| |
|
|
| T |
2495861 |
tgtttgttcctttcaatagaagggttactcgctggctggctgaattccttaggtttgttttgtggtctggagcttcactgaagatggc |
2495948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 100 - 316
Target Start/End: Original strand, 2485414 - 2485631
Alignment:
| Q |
100 |
gttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctgga |
199 |
Q |
| |
|
||||||||||| ||||||||||||| | |||||||||| ||||| | ||||||| |||| | ||||||| | ||||||| ||||||||| ||||||||| |
|
|
| T |
2485414 |
gttgaaatgtcactttttcaggttgattgtgtttgttcgtttcagttgaagggttattcgcaggctggctgagttgcttatgttcattttgtggtctgga |
2485513 |
T |
|
| Q |
200 |
gcgttgctgaagatggctgttaaaaaggattatagttttagggccgtggaatt-ttaagttcattttgattatttattatgtagtaaaactagatggggt |
298 |
Q |
| |
|
|| ||||||||||||| || |||| || | |||||| ||| | || ||||| |||||||| ||| ||||||| || || ||| |||||||||| | | |
|
|
| T |
2485514 |
gccttgctgaagatggtggtgaaaaggggtaatagttctagtgttgtcgaattcctaagttcagtttaattatttcttgtggagtcaaactagatgagat |
2485613 |
T |
|
| Q |
299 |
gaaaaaactataggttct |
316 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
2485614 |
gaaaaaactatatgttct |
2485631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 25 - 365
Target Start/End: Original strand, 2504152 - 2504487
Alignment:
| Q |
25 |
tgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagac-ttataacttcatagttgaaatgtctctttttcaggtt |
123 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||| |||||||| |||| |||||||| || ||||||| | ||||||||||||||| ||||||||| |
|
|
| T |
2504152 |
tgtgttgccttataatgtctcaatattttaattttaggtgcaccttaagcctcaaaatacactttataacatattagttgaaatgtctc--tttcaggtt |
2504249 |
T |
|
| Q |
124 |
ggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaa |
223 |
Q |
| |
|
|| ||||||||| ||||||||||||||| |||||| | | | ||||||| ||||| |||| |||| |||||| ||||||||||||| | | || |
|
|
| T |
2504250 |
ggctgtgtttgtttgtttcaatagaagggttattcacaatcag----aattgctcgggttctttttgtggtgtggagctttgctgaagatgg--ggtgaa |
2504343 |
T |
|
| Q |
224 |
aaggattatagttttagggccgtggaa--ttttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggttcttaata |
321 |
Q |
| |
|
|||| | ||||| ||||| | || | |||||||| ||||||||||| || || ||| |||||||| | ||||||||| ||| | ||| | |||| |
|
|
| T |
2504344 |
aagggtagtagttatagggtaatttaacttcttaagttctgtttgattatttcttctgaagtcaaactagaggaggtgaaaaacctacatgttttaaata |
2504443 |
T |
|
| Q |
322 |
gacaggctaaacttgtctctggttttattattatatgttgtttg |
365 |
Q |
| |
|
|| ||| |||||||||||||| ||||||||| | ||||||||| |
|
|
| T |
2504444 |
gataggataaacttgtctctgactttattattgtctgttgtttg |
2504487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 63 - 136
Target Start/End: Original strand, 2447037 - 2447109
Alignment:
| Q |
63 |
tgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgtt |
136 |
Q |
| |
|
||||||| |||| |||||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
2447037 |
tgcacctgaagcctcaaaatagacttataacatcatagttgaaatgcctc-ttttcaggttggttgtgtttgtt |
2447109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 2447116 - 2447172
Alignment:
| Q |
171 |
aattgcttaggttcattttctggtctggagcgttgctgaagatggctgttaaaaagg |
227 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||||||| || ||||||| |
|
|
| T |
2447116 |
aattgcttaggttcattttatggtctggagctttgctgaagatggcggtgaaaaagg |
2447172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 40 - 149
Target Start/End: Complemental strand, 7331940 - 7331830
Alignment:
| Q |
40 |
tgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagact-tataacttcatagttgaaatgtctctttttcaggttggtcgtgtttgttca |
138 |
Q |
| |
|
|||||||||||| ||||||| ||||||| |||| || ||||| | |||||||| ||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
7331940 |
tgtctcaatattataattttaattgcaccttaagcctcgaaatactccgtataacttaatagttggaatgtctctttttcaggttggctgtgtttgtttg |
7331841 |
T |
|
| Q |
139 |
tttcaatagaa |
149 |
Q |
| |
|
||||||||||| |
|
|
| T |
7331840 |
tttcaatagaa |
7331830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 2641633 - 2641519
Alignment:
| Q |
97 |
atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtct |
196 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| | | | |||||||| ||||| |||| |||||| |
|
|
| T |
2641633 |
atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattcaaaatcag----aattgcttgggttctttttgtggtct |
2641538 |
T |
|
| Q |
197 |
ggagcgttgctgaagatgg |
215 |
Q |
| |
|
||||| ||||| ||||||| |
|
|
| T |
2641537 |
ggagctttgctaaagatgg |
2641519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 159
Target Start/End: Complemental strand, 2649126 - 2649064
Alignment:
| Q |
97 |
atagttgaaatgtctctttttcaggttggtcgtgtttgttcatttcaatagaagggtaattca |
159 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||| |
|
|
| T |
2649126 |
atagttggaatgtctctttttcaggttggctgtgtttgtttgtttcaatggaagggttattca |
2649064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 426
Target Start/End: Original strand, 2496063 - 2496092
Alignment:
| Q |
397 |
tttgacttgtatgtttcactgtgttattct |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
2496063 |
tttgacttgtatgtttcactgtgttattct |
2496092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 414
Target Start/End: Original strand, 2413 - 2810
Alignment:
| Q |
17 |
tttccacatgtgttgcattatattgtctcaatattttaattttgcgtgcacctcaagcttcaaaatagacttataacttcatagttgaaatgtctctttt |
116 |
Q |
| |
|
|||||| || |||||| ||| | ||||||||||||||||| || |||||||||| | |||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
2413 |
tttccatatatgttgccttacaatgtctcaatattttaatatttattgcacctcaatcctcaaaatagacttataacgtcatagttgaaatgtctctttt |
2512 |
T |
|
| Q |
117 |
tcaggttggtcgtgtttgttcatttcaatagaagggtaattcactagctggcttaattgcttaggttcattttctggtctggagcgttgctgaagatggc |
216 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| |||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
2513 |
tcaggttggttgtgtttgttcgtttcaatagaagggttattctctagctggctgaattgcttaggttcatttgtgggtctggagcgttgctgaatatggc |
2612 |
T |
|
| Q |
217 |
tgttaaaaaggattatagttttagggccgtggaatt-ttaagttcattttgattatttattatgtagtaaaactagatggggtgaaaaaactataggttc |
315 |
Q |
| |
|
|| ||||||| | |||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| |||| |||||||||||| |||| |
|
|
| T |
2613 |
ggtgaaaaagggtaatagttttagggttgtggaattcctaagttcattttgattatttattatggtgtaaaacttgatgaggtgaaaaaact---tgttc |
2709 |
T |
|
| Q |
316 |
ttaatagacaggctaaacttgtctctggttttattattatatgttgtttg--gaagaaaatacaatcttcaaagtctaatatatttgacttgtatgtttc |
413 |
Q |
| |
|
| |||||| |||||||| |||||||||| |||||||||| |||||||||| | | |||||||||||||||||||||||||| ||||| || ||||||| |
|
|
| T |
2710 |
tgaatagataggctaaatttgtctctggctttattattaaatgttgtttgtaggaaaaaatacaatcttcaaagtctaatatgtttgattttcatgtttc |
2809 |
T |
|
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