View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16503_low_6 (Length: 525)

Name: NF16503_low_6
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16503_low_6
NF16503_low_6
[»] chr7 (4 HSPs)
chr7 (40-525)||(18398749-18399244)
chr7 (89-476)||(6238894-6239281)
chr7 (106-475)||(32401470-32401855)
chr7 (101-175)||(18151950-18152024)
[»] chr4 (8 HSPs)
chr4 (101-306)||(27259096-27259301)
chr4 (89-306)||(21201942-21202158)
chr4 (101-306)||(35944819-35945024)
chr4 (87-287)||(2916476-2916674)
chr4 (394-525)||(35944587-35944717)
chr4 (263-306)||(44347766-44347809)
chr4 (87-127)||(40088574-40088614)
chr4 (226-306)||(40088691-40088771)
[»] chr2 (8 HSPs)
chr2 (399-525)||(14918662-14918789)
chr2 (264-525)||(42296582-42296850)
chr2 (226-336)||(14918101-14918213)
chr2 (90-168)||(14918217-14918295)
chr2 (221-327)||(38714882-38714990)
chr2 (90-228)||(42296174-42296307)
chr2 (206-306)||(18610121-18610220)
chr2 (42-86)||(33855815-33855859)
[»] chr3 (2 HSPs)
chr3 (112-241)||(896308-896437)
chr3 (28-83)||(3283675-3283731)
[»] chr6 (1 HSPs)
chr6 (158-306)||(29179644-29179794)
[»] chr1 (4 HSPs)
chr1 (239-306)||(33188783-33188850)
chr1 (355-525)||(10358662-10358831)
chr1 (87-227)||(52973671-52973809)
chr1 (341-375)||(33188898-33188932)
[»] chr8 (2 HSPs)
chr8 (393-434)||(27424863-27424904)
chr8 (371-439)||(11435176-11435244)


Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 40 - 525
Target Start/End: Original strand, 18398749 - 18399244
Alignment:
Q  40 ccatgtctaaaccacaaggat-ggtttaacttatggtgagttgaaccttagaaatagagaaaataagagataaaaacataattgcataaatcattagata 138  Q
    |||||||||||||| ||| |  |||||| || |||||||| |||| | ||||||| ||||| ||||| ||||||||||||||||||||||||||||||||    
T  18398749 ccatgtctaaaccataagaagaggtttagctcatggtgagctgaatcgtagaaatggagaagataagggataaaaacataattgcataaatcattagata 18398848  T
Q  139 agattagagcttactaaagagaaattacaaacctttgaggatgaaggtgagttatttggagatctcccttaacaatttactctaatgactctaaaactct 238  Q
    ||||||||| |||| |||||||||||||||  ||||||||||||||||||||| |||| | ||  |||||||||||||||||||||||  ||||||||||    
T  18398849 agattagagtttacaaaagagaaattacaattctttgaggatgaaggtgagttctttgcatattacccttaacaatttactctaatgaacctaaaactct 18398948  T
Q  239 aagattctaactaatatactttcaatatgaaatggatgaaggtatgagatgaagaagaatgatttgaaattctaatggttgctagggtttattggaggtt 338  Q
    |||||| ||||||  || |||||| |||| |||  || ||||||||||||||||||||||||||||||  | ||||| |  |||||||| ||| |||  |    
T  18398949 aagattataactaccatgctttcagtatggaatatattaaggtatgagatgaagaagaatgatttgaatctttaatgatgactagggttgattagagtct 18399048  T
Q  339 -----------tttctattctattcagcacaacccaccactagcacacacttgcaaattaggtcttgttgtccttttatagtacaagtcctttcttatcc 427  Q
               | || |||||||||||||||||  ||||||||||||| ||| ||||||||||||| |||| ||||||||||||||||| ||||||||||    
T  18399049 gctgcttccaatctccattctattcagcacaacataccactagcacaccctttcaaattaggtctttttgttcttttatagtacaagtcttttcttatcc 18399148  T
Q  428 tttagtgccctttttagtctttttccatgtgatggtccttgccttaaccattaagcataagaataaaccttaaccctttagtgtactatttgagactc 525  Q
    ||||||| || |||| ||||||| |||||||||||||||| |||||||| ||||||||| ||||| | |||| |||||| ||||||||||||||||||    
T  18399149 tttagtg-ccattttggtcttttcccatgtgatggtcctttccttaaccgttaagcataggaatata-cttatcccttttgtgtactatttgagactc 18399244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 89 - 476
Target Start/End: Complemental strand, 6239281 - 6238894
Alignment:
Q  89 gaaatagagaaaataagagataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttgaggatgaaggtga 188  Q
    ||||| ||||| |||||| ||||||||||||||||||||||| |   |||||||||||| ||||  |||| |||||| || |||||||||||||||||||    
T  6239281 gaaatggagaagataagatataaaaacataattgcataaatctt---ataagattagagtttacacaagataaattaaaatcctttgaggatgaaggtga 6239185  T
Q  189 gttatttggagatctcccttaacaatttactctaatgactctaaaactctaagattctaactaatatactttcaatatgaaatggatgaaggtatgagat 288  Q
     || |||| ||| ||| || ||||||| ||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||    
T  6239184 -ttctttgcaga-ctcactaaacaattcactttaatgactctaaaactctaagattctaactaatatgctttctataggaaatggaagaaggtatgagat 6239087  T
Q  289 gaagaagaatgatttgaaattctaa--tggttgctagggtttattggaggtt-----------tttctattctattcagcacaacccaccactagcacac 375  Q
    ||||||||| ||||||||  |||||  | || ||||||||| |||||||| |           | |||||| ||||||||||| || ||||||| | |||    
T  6239086 gaagaagaaagatttgaatctctaagttcgtggctagggttgattggaggatgttacctccaatctctattttattcagcacatccaaccactaactcac 6238987  T
Q  376 acttgcaaattaggtcttgttgtccttttatagtacaagtcctttcttatcctttagtgccctttttagtctttttccatgtgatggtccttgccttaac 475  Q
    |||  ||||| | | ||| |||||||       |||||||| ||| |||||||||| ||||| |||| ||||||| ||||||||||||||||| ||||||    
T  6238986 actcacaaatgaaggcttattgtcct-------tacaagtcttttattatcctttaatgccc-ttttggtcttttcccatgtgatggtccttgacttaac 6238895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 106 - 475
Target Start/End: Complemental strand, 32401855 - 32401470
Alignment:
Q  106 agataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttgaggatgaaggtgagttatttggagatctcc 205  Q
    ||||||||||||||||||||||||||||| |  | | ||||| |||  |||||||| |||||| |||||||||||| | | ||||| |||| |   |||     
T  32401855 agataaaaacataattgcataaatcattaaaataaagtagagtttataaaagagaa-ttacaatcctttgaggatggaagcgagttctttgcaacactca 32401757  T
Q  206 cttaacaatttactctaatgactctaaaactctaagattctaactaatatactttcaatatgaaatggatgaaggtatgagatgaagaagaatgatttga 305  Q
    | |||||||||| ||||||||||||||||| | ||||| ||||||| ||| ||||||| ||||||| |||||||||||||||||||||| | ||||||||    
T  32401756 cataacaatttattctaatgactctaaaacacaaagat-ctaactactatgctttcaagatgaaattgatgaaggtatgagatgaagaaaagtgatttga 32401658  T
Q  306 aattcta--atggttgctagggtttattggaggtt-----------tttctattctattcagcac-----aacccaccactagcacacacttgcaaatta 387  Q
    |  ||||  ||||| ||||||||| |||||||| |           | | |||||||||||||||     ||| || | ||| ||||| ||||| ||| |    
T  32401657 atctctaagatggtggctagggttgattggaggatgttgcctcgaatctatattctattcagcacaacataacacaacgctaacacacccttgccaatga 32401558  T
Q  388 ggtcttgttgtccttttatagtacaagtcctttcttatcctttagtgccctttttagtcttttt-ccatgtgatggtccttgccttaac 475  Q
     | |||||||||||||||||||| ||||| |||||||||| |||| | || ||||||| ||||| ||||||||||||| || |||||||    
T  32401557 aggcttgttgtccttttatagtaaaagtcatttcttatccattag-ggccgttttagtatttttcccatgtgatggtctttaccttaac 32401470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 101 - 175
Target Start/End: Complemental strand, 18152024 - 18151950
Alignment:
Q  101 ataagagataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttg 175  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||| |||  ||||||||||||||| ||||||    
T  18152024 ataagaaataaagacataattgcataaatcatttgataagattagagtttataaaagagaaattacaatcctttg 18151950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 134; Significance: 2e-69; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 101 - 306
Target Start/End: Original strand, 27259096 - 27259301
Alignment:
Q  101 ataagagataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttgaggatgaaggtgagttatttggaga 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| ||||||||| ||| |||| |||    
T  27259096 ataagagataaaaacaaaattgcataaatcattagataagattagagtttacaaaagagaaattacaatcctttgagaatgaaggtgggttctttgcaga 27259195  T
Q  201 tctcccttaacaatttactctaatgactctaaaactctaagattctaactaatatactttcaatatgaaatggatgaaggtatgagatgaagaagaatga 300  Q
     |||||||||||| |||||||||||||||||||||| ||||| |||||||| ||| |||  || ||||||||||||||||||||||||||| ||||||||    
T  27259196 cctcccttaacaaattactctaatgactctaaaactttaagactctaactactatgcttcgaaaatgaaatggatgaaggtatgagatgaaaaagaatga 27259295  T
Q  301 tttgaa 306  Q
    ||||||    
T  27259296 tttgaa 27259301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 89 - 306
Target Start/End: Original strand, 21201942 - 21202158
Alignment:
Q  89 gaaatagagaaaataagagataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttgaggatgaaggtga 188  Q
    ||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||||||  |||||||||     
T  21201942 gaaatggagaagataagagataaaaacacaattgcataaatcattagataagattagagtttacaaaagagaaatt-caatcctttgaaaatgaaggtgg 21202040  T
Q  189 gttatttggagatctcccttaacaatttactctaatgactctaaaactctaagattctaactaatatactttcaatatgaaatggatgaaggtatgagat 288  Q
     || |||| ||| |||||||||||| |||||||||||||||||||||| ||||| |||||||| ||| |||  || ||||||||||||||||||||||||    
T  21202041 attctttgcagacctcccttaacaaattactctaatgactctaaaactttaagactctaactactatgcttagaaaatgaaatggatgaaggtatgagat 21202140  T
Q  289 gaagaagaatgatttgaa 306  Q
    ||| ||||||||||||||    
T  21202141 gaaaaagaatgatttgaa 21202158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 101 - 306
Target Start/End: Complemental strand, 35945024 - 35944819
Alignment:
Q  101 ataagagataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttgaggatgaaggtgagttatttggaga 200  Q
    ||||||||||||||||||||||| |||||||||| |||||||||||| | ||  |||| ||||||||| |||  |||||| || ||||||| |||| |      
T  35945024 ataagagataaaaacataattgcctaaatcattaaataagattagagttaacgtaagacaaattacaatcctccgaggataaatgtgagttctttgcaac 35944925  T
Q  201 tctcccttaacaatttactctaatgactctaaaactctaagattctaactaatatactttcaatatgaaatggatgaaggtatgagatgaagaagaatga 300  Q
     ||  |||||||||||||| |||||||| ||| ||||||||||| |||||| ||| | ||||| |||||||||||||| ||||| |||||| ||||||||    
T  35944924 actttcttaacaatttactataatgactttaagactctaagattttaactactatgccttcaagatgaaatggatgaaagtatgcgatgaaaaagaatga 35944825  T
Q  301 tttgaa 306  Q
    ||||||    
T  35944824 tttgaa 35944819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 87 - 287
Target Start/End: Original strand, 2916476 - 2916674
Alignment:
Q  87 tagaaatagagaaaataagagataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttgaggatgaaggt 186  Q
    ||||||| || || ||||||||||||||||| |||||||||| ||||||||||| |||||| |||  ||| |||||||| || |||||||| ||||||||    
T  2916476 tagaaatggaaaatataagagataaaaacattattgcataaaccattagataagcttagagtttataaaaaagaaattataatcctttgagaatgaaggt 2916575  T
Q  187 gagttatttggagatctcccttaacaatttactctaatgactctaaaactctaagattctaactaatatactttcaatatgaaatggatgaaggtatgag 286  Q
    ||| | ||||  |   || || ||||||||||||||||||||||| ||||||||||   |||||| ||  ||||| ||||||||| ||| ||| ||||||    
T  2916576 gag-tctttgctgcattcactcaacaatttactctaatgactctagaactctaaga-cataactattacgctttctatatgaaatagattaagatatgag 2916673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 394 - 525
Target Start/End: Complemental strand, 35944717 - 35944587
Alignment:
Q  394 gttgtccttttatagtacaagtcctttcttatcctttagtgccctttttagtctttttccatgtgatggtccttgccttaaccattaagcataagaataa 493  Q
    |||||||||||| | ||||| || |||||||||| ||||||| ||| |  || ||||| ||||| |||||| ||  |||||||||||||||||||||||     
T  35944717 gttgtccttttacaatacaaatcatttcttatcccttagtgctcttatg-gtattttttcatgttatggtctttttcttaaccattaagcataagaatat 35944619  T
Q  494 accttaaccctttagtgtactatttgagactc 525  Q
    |||||| || ||| ||||| |||  |||||||    
T  35944618 accttatcctttttgtgtattatccgagactc 35944587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 44347766 - 44347809
Alignment:
Q  263 atatgaaatggatgaaggtatgagatgaagaagaatgatttgaa 306  Q
    ||||||||||||||||||||||| |||||||  |||||||||||    
T  44347766 atatgaaatggatgaaggtatgacatgaagacaaatgatttgaa 44347809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 127
Target Start/End: Original strand, 40088574 - 40088614
Alignment:
Q  87 tagaaatagagaaaataagagataaaaacataattgcataa 127  Q
    ||||||| || || |||||||||||||||||||||||||||    
T  40088574 tagaaatggaaaatataagagataaaaacataattgcataa 40088614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 40088691 - 40088771
Alignment:
Q  226 actctaaaactctaagattctaactaatatactttcaatatgaaatggatgaaggtatgagatgaagaagaatgatttgaa 306  Q
    ||||||||||| |||||||||||||| ||| |||||||    |||||||||||||| | |||  ||||| |||| ||||||    
T  40088691 actctaaaactttaagattctaactactatgctttcaagtctaaatggatgaaggtttaagacaaagaataatggtttgaa 40088771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 80; Significance: 3e-37; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 399 - 525
Target Start/End: Original strand, 14918662 - 14918789
Alignment:
Q  399 ccttttatagtacaagtcctttcttatcctttagtgccctttttagtctttttccatgtgatggtccttgccttaaccattaagcataagaataaacctt 498  Q
    |||||||||||||||||| |||| ||||||| |||| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||    
T  14918662 ccttttatagtacaagtcatttcctatccttgagtgtcctttttggtcttttcccatgtgatggtctttgccttaaccattaagcataagaatatacctt 14918761  T
Q  499 a-accctttagtgtactatttgagactc 525  Q
    |  |||||| ||||||||||||||||||    
T  14918762 accccctttggtgtactatttgagactc 14918789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 264 - 525
Target Start/End: Original strand, 42296582 - 42296850
Alignment:
Q  264 tatgaaatggatgaaggtatgagatgaagaagaatgatttgaaattctaa--tggttgctagggtttattggaggtttttctat------tctattcagc 355  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||  |||| ||||| ||| |||||||| |  | | |      |||| ||       
T  42296582 tatgaaatggatgaaggtatgagatgaagaagaatgatttgaatctctaagttggtggctagagttgattggaggctactgtctccaacctctactccat 42296681  T
Q  356 acaacccaccactagcacacacttgcaaattaggtcttgttgtccttttatagtacaagtcctttcttatcctttagtgccctttttagtctttttccat 455  Q
     || | || ||||| ||||| ||||||||| | | |||||||||||||||| ||||||||||||||||||||||||||   | |||| ||| |||||||     
T  42296682 tcagcacatcactaacacacccttgcaaatgaaggcttgttgtccttttatggtacaagtcctttcttatcctttagt-atcattttggtcattttccaa 42296780  T
Q  456 gtgatggtccttgccttaaccattaagcataagaataaaccttaaccctttagtgtactatttgagactc 525  Q
    | |||||||  |  ||||||||||||||| ||||||| |||||| ||| |  ||||||||||||||||||    
T  42296781 gcgatggtctgtttcttaaccattaagcagaagaatataccttatcccatccgtgtactatttgagactc 42296850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 336
Target Start/End: Complemental strand, 14918213 - 14918101
Alignment:
Q  226 actctaaaactctaagattctaactaatatactttcaatatgaaatggatgaagg--tatgagatgaagaagaatgatttgaaattctaatggttgctag 323  Q
    ||||||||||||||||||||||| || ||| ||||||||||| ||| ||||||||  ||||||||||||||||||||||||||  ||||||| | |||||    
T  14918213 actctaaaactctaagattctaattattatgctttcaatatggaatagatgaaggtatatgagatgaagaagaatgatttgaatctctaatgatggctag 14918114  T
Q  324 ggtttattggagg 336  Q
    |||| ||||||||    
T  14918113 ggttgattggagg 14918101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 14918295 - 14918217
Alignment:
Q  90 aaatagagaaaataagagataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaa 168  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||    
T  14918295 aaatggagaagataagagataaaaacataattgcataaatcattagataagattagagtttacaaaagagaaataacaa 14918217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 221 - 327
Target Start/End: Complemental strand, 38714990 - 38714882
Alignment:
Q  221 taatgactctaaaactctaagattctaactaatatactttcaatatgaaatggatgaaggtatgagatgaagaagaa-tgatttgaaattcta--atggt 317  Q
    |||||||||||||| || ||||| ||||||| ||| ||||||| |||||||||||||| ||||||||||||||| ||  |||||||| |||||  |||||    
T  38714990 taatgactctaaaaatcgaagat-ctaactactatgctttcaagatgaaatggatgaatgtatgagatgaagaaaaagcgatttgaatttctaagatggt 38714892  T
Q  318 tgctagggtt 327  Q
     |||||||||    
T  38714891 ggctagggtt 38714882  T

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Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 90 - 228
Target Start/End: Original strand, 42296174 - 42296307
Alignment:
Q  90 aaatagagaaaataagagataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttgaggatgaaggtgag 189  Q
    |||||||||| |||| || ||||||||||||||||||||| ||||      |||| || || | ||||||||||||||| | | |||||||||||||||     
T  42296174 aaatagagaagataatagttaaaaacataattgcataaattattact----attatagtttgcaaaagagaaattacaatcttctgaggatgaaggtgaa 42296269  T
Q  190 ttatttggagatctcccttaacaatttactctaatgact 228  Q
    || |||| ||  |||  ||||||||||||||||||||||    
T  42296270 tt-tttgcagcactcaattaacaatttactctaatgact 42296307  T

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Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 306
Target Start/End: Original strand, 18610121 - 18610220
Alignment:
Q  206 cttaacaatttactctaatgactctaaaactctaagattctaactaatatactttcaatatgaaatggatgaaggtatgagatgaagaagaatgatttga 305  Q
    |||||||| ||||||| |||| | |||||||||||||| ||| |||  || |||||||  || ||||||||||||||||| |||||||| | ||||||||    
T  18610121 cttaacaacttactcttatgagtgtaaaactctaagat-ctagctacaatgctttcaaggtgtaatggatgaaggtatgaaatgaagaaaagtgatttga 18610219  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 33855815 - 33855859
Alignment:
Q  42 atgtctaaaccacaaggatggtttaacttatggtgagttgaacct 86  Q
    |||||||||||||||| | |||||| || ||||||||||||||||    
T  33855815 atgtctaaaccacaagaagggtttagctcatggtgagttgaacct 33855859  T

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Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 112 - 241
Target Start/End: Complemental strand, 896437 - 896308
Alignment:
Q  112 aaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttgaggatgaaggtgagttatttggagatctcccttaac 211  Q
    |||||||||||||||||||||||||||||| ||||  |||| ||||||||||| ||| |||||||||||  | ||||||| |||| |||||  ||||| |    
T  896437 aaacataattgcataaatcattagataagaatagaatttacaaaagagaaatttcaatcctttgaggatagatgtgagttctttgcagatcaaccttacc 896338  T
Q  212 aatttactctaatgactctaaaactctaag 241  Q
    ||||||| |||||||||||| || ||||||    
T  896337 aatttaccctaatgactctacaaatctaag 896308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 3283731 - 3283675
Alignment:
Q  28 atcatagcgtcaccatgtctaaaccacaagga-tggtttaacttatggtgagttgaa 83  Q
    |||||| | |||||||||||||||||||||||  ||||||||| |||||||| ||||    
T  3283731 atcataacctcaccatgtctaaaccacaaggaggggtttaactcatggtgagctgaa 3283675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 158 - 306
Target Start/End: Original strand, 29179644 - 29179794
Alignment:
Q  158 agaaattacaaacctttgaggatgaaggtgagttatttggagatctcccttaacaatttactctaatgactctaaaactc--taagattctaactaatat 255  Q
    ||||||||||| ||||||||||||||  |||||| |||| |   ||| ||||||||||||||||||||||| ||||||||  ||||| |||||||| |||    
T  29179644 agaaattacaatcctttgaggatgaaaatgagttgtttgaaccactcacttaacaatttactctaatgactataaaactctataaga-tctaactactat 29179742  T
Q  256 actttcaatatgaaatggatgaaggt-atgagatgaagaagaatgatttgaa 306  Q
     ||||||| ||| ||| ||||||||| ||||||||||||| | |||||||||    
T  29179743 gctttcaagatggaattgatgaaggtaatgagatgaagaaaagtgatttgaa 29179794  T

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Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 239 - 306
Target Start/End: Original strand, 33188783 - 33188850
Alignment:
Q  239 aagattctaactaatatactttcaatatgaaatggatgaaggtatgagatgaagaagaatgatttgaa 306  Q
    ||||||||||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  33188783 aagattctaactactatgctttcaagatgaaatgtatgaaggtatgagatgaagaagaatgatttgaa 33188850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 355 - 525
Target Start/End: Complemental strand, 10358831 - 10358662
Alignment:
Q  355 cacaacccaccactagcacacacttgcaaattaggtcttgttgtccttttatagtacaagtcctttcttatcctttagtgccctttttagtctttttcca 454  Q
    |||||| ||||| |||| ||||||||||||| | | ||| ||||||||| | |||| ||||||||  |||||||||||||  || ||| ||||||| |||    
T  10358831 cacaacacaccattagcgcacacttgcaaatgaaggcttattgtcctttaacagtagaagtccttagttatcctttagtg-actctttcgtcttttccca 10358733  T
Q  455 tgtgatggtccttgccttaaccattaagcataagaataaaccttaaccctttagtgtactatttgagactc 525  Q
    | |||||||| || |||||||||||||||||   |||| |||||| |||||| |  |||| ||||||||||    
T  10358732 tatgatggtctttaccttaaccattaagcatctaaatataccttatccctttgggttactgtttgagactc 10358662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 227
Target Start/End: Original strand, 52973671 - 52973809
Alignment:
Q  87 tagaaatagagaaaataagagataaaaacataattgcataaatcattagataagattagagcttactaaagagaaattacaaacctttgaggatgaaggt 186  Q
    ||||||| ||||| |||| ||| |||||||||| || ||| |||||||    ||| |||||  ||| ||||||||||||||| |||||||||||||||||    
T  52973671 tagaaatggagaagataaaagacaaaaacataactgaatatatcattaag--agagtagagtctacaaaagagaaattacaatcctttgaggatgaaggt 52973768  T
Q  187 gagttatttggagatctcccttaacaatttactctaatgac 227  Q
    |||||  ||| |||  ||| |||||||||||||||||||||    
T  52973769 gagttcgttgcagaaatccattaacaatttactctaatgac 52973809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 341 - 375
Target Start/End: Original strand, 33188898 - 33188932
Alignment:
Q  341 tctattctattcagcacaacccaccactagcacac 375  Q
    ||||||||||| |||||||||||||||||||||||    
T  33188898 tctattctattaagcacaacccaccactagcacac 33188932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 393 - 434
Target Start/End: Original strand, 27424863 - 27424904
Alignment:
Q  393 tgttgtccttttatagtacaagtcctttcttatcctttagtg 434  Q
    ||||||||||||||| ||||||||||||||||||||||||||    
T  27424863 tgttgtccttttatactacaagtcctttcttatcctttagtg 27424904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 11435244 - 11435176
Alignment:
Q  371 cacacacttgcaaattaggtcttgttgtccttttatagtacaa-gtcctttcttatcctttagtgccctt 439  Q
    ||||||||||||||| | |  ||||||||| |||||||||||| |||||| |||||||||| ||||||||    
T  11435244 cacacacttgcaaataaagggttgttgtcc-tttatagtacaatgtccttccttatccttttgtgccctt 11435176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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