View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16503_low_7 (Length: 517)
Name: NF16503_low_7
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_7 |
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| [»] chr3 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 480; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 480; E-Value: 0
Query Start/End: Original strand, 10 - 517
Target Start/End: Complemental strand, 46239213 - 46238706
Alignment:
| Q |
10 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctccac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
46239213 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctcaac |
46239114 |
T |
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| Q |
110 |
aaaaatctgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatcc |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239113 |
aaaaatttgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatcc |
46239014 |
T |
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| Q |
210 |
attttacaccacagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagaca |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239013 |
attttacaccacagcctaatctcatggtcttgataaccccagctacaaacaagttgcctaataacacctactttccaagcatctggaactaagtcagaca |
46238914 |
T |
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| Q |
310 |
caagggtttgaaccccacctctgtagaatatggtttcttccctgacaaactctcccccatggtgaaaaatgcagttaaacttggtgttgtcctgcacaca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || |
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| T |
46238913 |
caagggtttgaaccccacctctgtagaatatggtttcttccctgacaaactctcccccatggtgaaaaatgcagttgaacttggtgttgtcctgcactca |
46238814 |
T |
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| Q |
410 |
taaaattggaccaataacattaagacacgtgtcttaaacgaccccacacacagaccccacataccacaatagacaaacaacataacaagttcacatcaat |
509 |
Q |
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| T |
46238813 |
aaaaattggaccaataacattaagacacgtgtctttaacgaccccacacacagaccccacataccacaatagacaaacaacataacaagttcacatcaat |
46238714 |
T |
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| Q |
510 |
taaaaacc |
517 |
Q |
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| T |
46238713 |
taaaaacc |
46238706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 385
Target Start/End: Complemental strand, 23540366 - 23540223
Alignment:
| Q |
242 |
ataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagacacaagggtttgaaccccacctctgtagaatatg |
341 |
Q |
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|||||||||||| | ||||||| | | ||||| |||||||||||||||| || ||| |||||||||| |||| || |||||||| ||||| ||| |
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| T |
23540366 |
ataaccccagctcctaacaagttccttgataactgctactttccaagcatcagggtctatatcagacacaattgtttccacaccacctctatagaaaatg |
23540267 |
T |
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| Q |
342 |
gtttcttccctgacaaactctcccccatggtgaaaaatgcagtt |
385 |
Q |
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| T |
23540266 |
gttttatgcctaaaaaactccccaccatggtgaaagatgcagtt |
23540223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 10 - 517
Target Start/End: Original strand, 3455444 - 3455952
Alignment:
| Q |
10 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctccac |
109 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
3455444 |
acatcatcaaattgtcttcatcttccccactagactcattcaaatccacaaagttaggcatatcaaccttgacagacatattagtaacattatgctcaac |
3455543 |
T |
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| Q |
110 |
aaaaatctgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgttgtctagatcaacttgaacaaagtcattctcaatcctatcc |
209 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455544 |
aaaaatttgtccatcaattccttcacccacagcatagatggcaatctcatctgcaatgctgtctagatcaacttgaacaaagtcattctcaatcctatcc |
3455643 |
T |
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| Q |
210 |
attttacaccacagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagaca |
309 |
Q |
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| T |
3455644 |
attttacaccacagcctaatctcatggtcttgataaccccagctacacacaagttgcctaataacacctactttccaagcatctggaactaagtcagaca |
3455743 |
T |
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| Q |
310 |
caagggtttgaa-ccccacctctgtagaatatggtttcttccctgacaaactctcccccatggtgaaaaatgcagttaaacttggtgttgtcctgcacac |
408 |
Q |
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||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3455744 |
caagggttttaacccccacctctgtagaatacggtttcttccctgacaaactctcccccatggtgaaaaatgcagttgaacttggtgttgtcctgcacac |
3455843 |
T |
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| Q |
409 |
ataaaattggaccaataacattaagacacgtgtcttaaacgaccccacacacagaccccacataccacaatagacaaacaacataacaagttcacatcaa |
508 |
Q |
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| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3455844 |
aaaaaattggaccaataacattaagacacgtgtcttataagaccccacacacagaccccacataccacaatagacaaacaacataacaagttcacatcaa |
3455943 |
T |
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| Q |
509 |
ttaaaaacc |
517 |
Q |
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|| |||||| |
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| T |
3455944 |
tttaaaacc |
3455952 |
T |
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