View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16503_low_9 (Length: 490)
Name: NF16503_low_9
Description: NF16503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16503_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 17 - 473
Target Start/End: Original strand, 41638356 - 41638812
Alignment:
| Q |
17 |
accatcaatgttaagagctatgaaactgtcatgtggaggctgccatctaattactacatcagatttgtattgatcagcttgattcagaataggagaaaca |
116 |
Q |
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| T |
41638356 |
accatcaatgttaagagctatgaaactgtcatgtggaggctgccatctaattactacatcagatttgtattgatcagcttgattcagaataggagaaaca |
41638455 |
T |
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| Q |
117 |
atgaattctatgtggtcctctccaactccagattgctctaaaaatctgacgcgcgttgctattgtttgatatcgctacggccttgtaagctgatgccaat |
216 |
Q |
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| T |
41638456 |
atgaattctatgtggtcctctccaactccagattgctctaaaaatctgacgcgcgttgctattgtttgatatcgctacggccttgtaagctgatgccaat |
41638555 |
T |
|
| Q |
217 |
gtgaattcaccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcatcaattatatttgagg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41638556 |
gtgaattcaccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcatcaattatatttgagg |
41638655 |
T |
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| Q |
317 |
gaagtgtatttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgactaaccg |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41638656 |
gaagtgtatttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgactaaccg |
41638755 |
T |
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| Q |
417 |
tatagtcaataacgagcatatcagtgtcagcccagttatctatccttccagaattca |
473 |
Q |
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| T |
41638756 |
tatagtcaataacgggcatatcagtgtcagcccagttatctatccttccagaattca |
41638812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 112 - 456
Target Start/End: Complemental strand, 2719403 - 2719080
Alignment:
| Q |
112 |
aaacaatgaattctatgtggtcctctccaactccagattgctctaaaaatctgacgcgcgttgctattgtttgatatcgctacggccttgtaagctgatg |
211 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| || || | | || | ||||||| |
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| T |
2719403 |
aaacattgaattctatgtggtcctctccaactccaaattgctctaaaaatctgatgcgcgttgctattgttcgatctcactgcagtctcattagctgata |
2719304 |
T |
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| Q |
212 |
ccaatgtgaattcaccatcacttgcaagcctccatgaaacacagtcatcactactttgaggatcagggggagacaacctcttgatgtcatcaattatatt |
311 |
Q |
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| T |
2719303 |
ccagcgtgaatcaaccatcacttgtaagcctccaagcaagacagtcatcaccactttgaggatgaggtggaggcaacctcttgatgtca----------- |
2719215 |
T |
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| Q |
312 |
tgagggaagtgtatttatcaaattactcaggtcccatcttcctcaaactgtcaacataatcggcaaccacttttgttgcttcaaaatgctgaatctgact |
411 |
Q |
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||||||||||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||||||| | || |||| |
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| T |
2719214 |
---------tgtatttatcaaactactctggtcccatctttct-tcactgtcaacataattttcaaccacttttgttgcttcaaaatgctcagtcagact |
2719125 |
T |
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| Q |
412 |
aaccgtatagtcaataacga-gcatatcagtgtcagcccagttatc |
456 |
Q |
| |
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||||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
2719124 |
aaccgtatagtttat-acgaggcatatcagtgtcagcccagttatc |
2719080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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