View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_12 (Length: 441)
Name: NF16504_high_12
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Complemental strand, 32856356 - 32855937
Alignment:
| Q |
11 |
atgaagaatgaagggacacctttgaatcctagaatgagattggaatcatatttgtttgcattatttaatgaaaatatgaagaatggaccaacctcagaga |
110 |
Q |
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| T |
32856356 |
atgaagaatgaagggacacctttgaatcctagaatgagattggaatcatatttgtttgcattatttaatgaaaatatgaagaatggaccaacctcagaga |
32856257 |
T |
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| Q |
111 |
ggagctatggtttatttgagcctgatgaaagtatggcttacaatgttgggttgtcttcttttgcaaagtcatcaaatccttctacttcaatttctcttgc |
210 |
Q |
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| T |
32856256 |
ggaactatggtttatttgagcctgatgaaagtatgacttacaatgttgggttgtcttcttttgcaaagtcatcaaatccttctacttcaatttctcttac |
32856157 |
T |
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| Q |
211 |
ctcctctgccactaggacaaaggt-nnnnnnnngagtaaaaacattttatttttcttttccaataatacacaacttatttagcttatattaaaatttttg |
309 |
Q |
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| T |
32856156 |
ctcctctgccactaggacaaaggtaaaaaaaaagagtaaaaacattttatttttcttttccaataatacacaacttatttagcttatattaaaatttttg |
32856057 |
T |
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| Q |
310 |
tgatagaaaatgaaaatgtaatttagatcatgattattggtatctttgaagtacatgcaaattgtggg----tatatactttcgacatgcagatgaatct |
405 |
Q |
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| T |
32856056 |
tgatagaaaatgaaaatgtaatttagatcatgattattggtatctttgaagtacatgcaaattgtgggtatatatatactttcgacatgcagatgaatct |
32855957 |
T |
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| Q |
406 |
agattcattttgatatatag |
425 |
Q |
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| T |
32855956 |
agattcattttgatatatag |
32855937 |
T |
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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 6292475 - 6292567
Alignment:
| Q |
16 |
gaatgaagggacacctttgaatcctagaatgagattggaatcatatttgtttgcattatttaatgaaaatatgaagaatggaccaacctcaga |
108 |
Q |
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|||| |||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||| || |||| ||||||||||||||| |
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| T |
6292475 |
gaatcaagggacacctttgaatcctagaatgaggttggaagtttacttgtttgcattgtttaatgaagatttgaaacctggaccaacctcaga |
6292567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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