View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16504_high_15 (Length: 422)

Name: NF16504_high_15
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16504_high_15
NF16504_high_15
[»] chr4 (2 HSPs)
chr4 (17-410)||(17464421-17464814)
chr4 (71-146)||(21276697-21276772)
[»] chr2 (4 HSPs)
chr2 (171-353)||(21516711-21516893)
chr2 (336-410)||(21516916-21516991)
chr2 (261-353)||(21512241-21512333)
chr2 (345-410)||(21512365-21512431)
[»] chr5 (1 HSPs)
chr5 (294-410)||(20054678-20054795)
[»] chr1 (3 HSPs)
chr1 (17-128)||(8236089-8236198)
chr1 (40-165)||(27318407-27318532)
chr1 (359-407)||(3363476-3363524)
[»] chr7 (1 HSPs)
chr7 (357-405)||(6530799-6530847)
[»] chr8 (1 HSPs)
chr8 (61-165)||(9798664-9798768)


Alignment Details
Target: chr4 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 410
Target Start/End: Complemental strand, 17464814 - 17464421
Alignment:
Q  17 agtttccaatgatccaagatggtttacaagtctgatagaggacttatttatagtctaaagtctcaagacaaggcattaaccacgaatttacaacctttaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  17464814 agtttccaatgatccaagatggtttacaagtctgatagaggacttatttatggtctaaagtctcaagacaaggcattaaccacgaatttacaacctttaa 17464715  T
Q  117 aatcaaggaaaactaagtgttttgtaacagtttcagcggacagcaaaaatacatggtctgaagtctcgatcgtgcacttttcagcttctcattacaaggc 216  Q
    ||||||||||||||||| ||||||||||||||||||| || ||||||||  ||||||||||||||| ||||||| ||||||||||||| ||||||| |||    
T  17464714 aatcaaggaaaactaagagttttgtaacagtttcagctgatagcaaaaacgcatggtctgaagtctagatcgtgtacttttcagcttcacattacagggc 17464615  T
Q  217 acgcacgttccctttcccagcagcacaccaaaacgtacagtcctgtgctaaaacgcacggtcatgtgctcttttctttggaacgtgcgttttttatacgc 316  Q
    |||||||||||||||||||||||||| |||||||| | |||| ||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||    
T  17464614 acgcacgttccctttcccagcagcacgccaaaacgcatagtcatgtgctaaaacgcacggtcatgtgctcttttttctggaacgtgcgtttttgatacgc 17464515  T
Q  317 acggattggtcatgcagcatgctaaaacgcacggtcttgtttttcctcttgttttgctccttttcatccttcattcttgatcttttcttgccta 410  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17464514 acggattggtcatgcagcatgctaaaacgcacggtttggtttttcctcttgttttgctccttttcatccttgattcttgatcttttcttgccta 17464421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 21276772 - 21276697
Alignment:
Q  71 ctaaagtctcaagacaaggcattaaccacgaatttacaacctttaaaatcaaggaaaactaa-gtgttttgtaacag 146  Q
    ||||| |||||||||||| |||||| |||||| |||||| ||||||| | ||||||||| || | ||||||||||||    
T  21276772 ctaaaatctcaagacaagacattaaacacgaaattacaaactttaaatt-aaggaaaaccaaagagttttgtaacag 21276697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 8e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 171 - 353
Target Start/End: Original strand, 21516711 - 21516893
Alignment:
Q  171 ggtctgaagtctcgatcgtgcacttttcagcttctcattacaaggcacgcacgttccctttcccagcagcacaccaaaacgtacagtcctgtgctaaaac 270  Q
    |||||||||||  || ||||||||||||||||||||  |||| |||||||| | |||||||| |||||| || |||||||| |  |||  ||||||||||    
T  21516711 ggtctgaagtccagaccgtgcacttttcagcttctccatacagggcacgcatggtccctttctcagcagtacgccaaaacgcatggtctggtgctaaaac 21516810  T
Q  271 gcacggtcatgtgctcttttctttggaacgtgcgttttttatacgcacggattggtcatgcagcatgctaaaacgcacggtct 353  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||| |||||||| | ||||| || ||||| ||| ||||    
T  21516811 gcacgggactgtgctcttttctttggaacgtgcgttttttatacgcacagattggtcctacagcacgccaaaacacacagtct 21516893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 336 - 410
Target Start/End: Original strand, 21516916 - 21516991
Alignment:
Q  336 tgctaaaacgcacggtct-tgtttttcctcttgttttgctccttttcatccttcattcttgatcttttcttgccta 410  Q
    |||||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| |||||||||||||||    
T  21516916 tgctaaaacgcacggtctgtgtttttcatcttgtttttctccttttcatccttcattctttatcttttcttgccta 21516991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 353
Target Start/End: Original strand, 21512241 - 21512333
Alignment:
Q  261 gtgctaaaacgcacggtcatgtgctcttttctttggaacgtgcgttttttatacgcacggattggtcatgcagcatgctaaaacgcacggtct 353  Q
    ||||||||||||||||    |||||||||||||||||||||| |||||| |||||  |||||||||| ||||||| |||||||||||| ||||    
T  21512241 gtgctaaaacgcacgggaccgtgctcttttctttggaacgtgtgtttttgatacgtgcggattggtcctgcagcacgctaaaacgcacagtct 21512333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 21512365 - 21512431
Alignment:
Q  345 gcacggtct-tgtttttcctcttgttttgctccttttcatccttcattcttgatcttttcttgccta 410  Q
    ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||||    
T  21512365 gcacggtctgtgtttttcctcttgctttgctccttttcattcttcattcttgatcttttcttaccta 21512431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 294 - 410
Target Start/End: Complemental strand, 20054795 - 20054678
Alignment:
Q  294 tggaacgtgcgttttttatacgcacggattggtcatgcagcatgctaaaacgcacggtct-tgtttttcctcttgttttgctccttttcatccttcattc 392  Q
    ||||||||| | |||||||||||||||||||||| || ||||||||||||||||||  |  || ||||||||||||||||||||||||||||||||||||    
T  20054795 tggaacgtgtgctttttatacgcacggattggtcctgaagcatgctaaaacgcacgaaccgtgcttttcctcttgttttgctccttttcatccttcattc 20054696  T
Q  393 ttgatcttttcttgccta 410  Q
    ||||||||||||||||||    
T  20054695 ttgatcttttcttgccta 20054678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 8236198 - 8236089
Alignment:
Q  17 agtttccaatgatccaagatggtttacaagtctgatagaggacttatttatagtctaaagtctcaagacaaggcattaaccacgaatttacaacctttaa 116  Q
    ||||||||||||||||||||  || ||||||||||| || ||  | ||||||| |||||  |||||||||||||||||| |||||| |||||| |||| |    
T  8236198 agtttccaatgatccaagatcatt-acaagtctgatggatgatctttttatagcctaaaacctcaagacaaggcattaaacacgaaattacaatcttt-a 8236101  T
Q  117 aatcaaggaaaa 128  Q
    ||||||||||||    
T  8236100 aatcaaggaaaa 8236089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 165
Target Start/End: Complemental strand, 27318532 - 27318407
Alignment:
Q  40 ttacaagtctgatagaggacttatttatagtctaaagtctcaagacaaggcattaaccacgaatttacaacctttaaaatcaaggaaaa-ctaagtgttt 138  Q
    |||||| |||||  |||||| ||||||||   || | ||||||||||||||||||| | ||||||||||| ||||||||| | |||||| | ||| ||||    
T  27318532 ttacaaatctgacggaggacctatttataacatagattctcaagacaaggcattaaactcgaatttacaagctttaaaat-agggaaaaccaaagagttt 27318434  T
Q  139 tgtaacagtttcagcggacagcaaaaa 165  Q
    |||||||| | |||| |||||||||||    
T  27318433 tgtaacagctccagctgacagcaaaaa 27318407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 407
Target Start/End: Original strand, 3363476 - 3363524
Alignment:
Q  359 ttcctcttgttttgctccttttcatccttcattcttgatcttttcttgc 407  Q
    |||||| |||||||||||||||| |||||||||| ||||| ||||||||    
T  3363476 ttcctcatgttttgctccttttcttccttcattcctgatcctttcttgc 3363524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 357 - 405
Target Start/End: Complemental strand, 6530847 - 6530799
Alignment:
Q  357 ttttcctcttgttttgctccttttcatccttcattcttgatcttttctt 405  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  6530847 ttttcctcttgttttgctccttttcagccttcattcttgatcctttctt 6530799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 165
Target Start/End: Original strand, 9798664 - 9798768
Alignment:
Q  61 tatttatagtctaaagtctcaagacaaggcattaaccacgaatttacaacctttaaaatcaaggaaaactaagtgttttgtaacagtttcagcggacagc 160  Q
    ||||||||| ||| |  ||| |||||||||||||| | ||||||||||| |||||||||    |||| | ||| |||||||||||| |  ||| ||||||    
T  9798664 tatttatagcctagaacctctagacaaggcattaaactcgaatttacaagctttaaaataggagaaaccaaagagttttgtaacagctctagctgacagc 9798763  T
Q  161 aaaaa 165  Q
    |||||    
T  9798764 aaaaa 9798768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University