View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_18 (Length: 420)
Name: NF16504_high_18
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_18 |
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Alignment Details
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 72 - 404
Target Start/End: Original strand, 45141636 - 45141968
Alignment:
| Q |
72 |
atatccaaaagtttctctcttaa-----aataatatttgtcagcaataatgtaaatattaattaccgaaacatatctttttcttggtatctaagaataca |
166 |
Q |
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| T |
45141636 |
atatccaaaagtttctctcttaatttaaaataatatttctcagcaataatgtaaatattaattaccgaaacatatctttttcttggtatctaagaataca |
45141735 |
T |
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| Q |
167 |
ctgtcattcatatattggaatgaaatttattcttatcaacaatctagtaaattttaagaaaaacatcatattacgacacaagttatcacagaaaccaaag |
266 |
Q |
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| T |
45141736 |
ctgtcattcatatattcgaatgaaatttattcttatcaacaatctagtaaattttaagaaaa-catcatattacgacacaagttatcacagaaaccaaag |
45141834 |
T |
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| Q |
267 |
aaccgaggctgttcaaaggtttctctggacacatgaaacaaaatgatgccgattttattttttctgtttagtactagttatatgaacgattgcagctgcc |
366 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45141835 |
aaccgaggctgttcaaaggtttctctggacacatgaaacaaaatgatgccaattttattttttctgtttagtactagttatatgaacgattgcagctgcc |
45141934 |
T |
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| Q |
367 |
agctcctccaccacccacgatgataagaaacatgaagc |
404 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
45141935 |
agctcctcca----ccacgatgataagaaacatgaagc |
45141968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 71
Target Start/End: Original strand, 45140774 - 45140831
Alignment:
| Q |
14 |
gaaaaagagcgggggaaaattctcataagttgagagcaaatttatgtgtaactactat |
71 |
Q |
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| T |
45140774 |
gaaaaagagcgggggaaaattctcataagttgagagcaaatttatgtgtaactactat |
45140831 |
T |
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