View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_2 (Length: 938)
Name: NF16504_high_2
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 828; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 828; E-Value: 0
Query Start/End: Original strand, 19 - 928
Target Start/End: Complemental strand, 42006894 - 42005986
Alignment:
| Q |
19 |
ctaatgcaccacgtttagaagctccaccactagtgctgcactcatactccacattggaatgggctattttctctagagcttctttttctatctcaaattc |
118 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
42006894 |
ctaatgcaccacgtttagaagctccaccactattgctgcactcatactccacattggaatgggctgttttctccagagcttctttttctatctcaaattc |
42006795 |
T |
|
| Q |
119 |
agctaaaatgtccaactgttacaatcacnnnnnnnnctgttaaatgttatgcaactaaattttgaatttagccatgtcttcttagattgataatatgaat |
218 |
Q |
| |
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|||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |
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| T |
42006794 |
agctaaaatgtccaactgttgcaatcacaaaaaaa-ctgttaaatgttatgcaactaaattttgaatttagccatgttttcttagattgataatgtgaat |
42006696 |
T |
|
| Q |
219 |
acaaacctgtgtggcagtatcaatatctagtgacacaactgaccctggcttgaccttcaagtttttaaattcatcgctttttagtctcaaactttcaact |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006695 |
acaaacctgtgtggcagtatcaatatctagtgacacaactgaccctggcttgaccttcaagtttttaaattcatcgctttttagtctcaaactttcaact |
42006596 |
T |
|
| Q |
319 |
tctgcaacaggccattgaagtaagttgctaccagtcttcttatcaagcttcacaattcttggaatgctctacacaatttgtgaaatttgagttaaaacac |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006595 |
tctgcaacaggccattgaagtaagttgctaccagtcttcttatcaagcttcacaattcttggaatgctctacacaatttgtgaaatttgagttaaaacac |
42006496 |
T |
|
| Q |
419 |
aggcactnnnnnnntattttaggcggagaaaaataaattaaaatgagatagatccggtatacctgaactgaagcccaacctttggcgacatcagcatatt |
518 |
Q |
| |
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||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42006495 |
aggcactaaaaaaatattttaggcggaaaaaaataaattaaaatgagatagatccggtatacctgaactgaagcccaacctttggcgacatcagcatatt |
42006396 |
T |
|
| Q |
519 |
cgctatcagattctccaatccaaccccacaaaactctcctatcctttttctgatcataaaatgtcttggaagcatagaatataccataatcatacctaag |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
42006395 |
cgctatcagattctccaatccaaccccacaaaactctcctatcctttttctgatcataaaatgtcttggaagcatagaatataccataatcatacctaag |
42006296 |
T |
|
| Q |
619 |
tccaataccaacatcatttttcaaatcatctgctgtgaacttaaccttcttctcatcataagttcccaatgaatagtaatcatgtctatcatcatccaag |
718 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
42006295 |
tccaataccaacatcatttttcaaatcatctgctgtgaacttaaccttcttctcatcataatttcccaatgaatagtaatcatgtctatcatcatccaag |
42006196 |
T |
|
| Q |
719 |
ctcaccttcatcacatgcttaacctcctccccattaacagaagtatccaagccattttcagacttcatggaaacagggaaaaagtccacacactcccaca |
818 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42006195 |
ctcaccttcatcacatgcttaacctcctccccattaacagaagtatccaagccattttcagacttcatggaaacagggaaaaagtccacacactcccaca |
42006096 |
T |
|
| Q |
819 |
taccggtgccaggaacagcgtcaagcaaatcctctttacgctcataggtcttgaagtccactgtgtcgtaaaccaaagcaacgccagttttgttaatctt |
918 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42006095 |
taccggtgccaggaacagcgtcaagcaaatcctctttacgctcataggtcttgaagtccactgtgtcgtaaaccaaagcaacgccagttttgttaatctt |
42005996 |
T |
|
| Q |
919 |
ggagcctatg |
928 |
Q |
| |
|
|||||||||| |
|
|
| T |
42005995 |
ggagcctatg |
42005986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 569 - 622
Target Start/End: Complemental strand, 42591103 - 42591050
Alignment:
| Q |
569 |
tgatcataaaatgtcttggaagcatagaatataccataatcatacctaagtcca |
622 |
Q |
| |
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|||||| |||||| ||||||||||||||| ||||||| ||||| ||||||||| |
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|
| T |
42591103 |
tgatcaaaaaatgacttggaagcatagaaattaccatagtcatatctaagtcca |
42591050 |
T |
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