View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_20 (Length: 392)
Name: NF16504_high_20
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 227 - 331
Target Start/End: Complemental strand, 14740351 - 14740247
Alignment:
| Q |
227 |
gacattacccagcaacaagacgataaccatcttcataacgttgctgatgccgacccgtacgagcaaccaaatcagacataatagaaacaatttaaacaaa |
326 |
Q |
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| T |
14740351 |
gacattacccagcaacaagacgataaccatcttcatagcgttgctgatgccgacccgtacgagcaaccaaatcagacataatagaaacaatttaaacaaa |
14740252 |
T |
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| Q |
327 |
aaccc |
331 |
Q |
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||||| |
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| T |
14740251 |
aaccc |
14740247 |
T |
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Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 233 - 331
Target Start/End: Original strand, 35111342 - 35111440
Alignment:
| Q |
233 |
acccagcaacaagacgataaccatcttcataacgttgctgatgccgacccgtacgagcaaccaaatcagacataatagaaacaatttaaacaaaaaccc |
331 |
Q |
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||||||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35111342 |
acccagcaataagacgataaacatcttcatagtgttgctgatgccgacccgtacgagcaaccaaatcagacataatagaaacaatttaaacaaaaaccc |
35111440 |
T |
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