View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_22 (Length: 382)
Name: NF16504_high_22
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_22 |
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Alignment Details
Target: chr6 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 2389414 - 2389058
Alignment:
| Q |
19 |
gctaaagacaaatcaatgttgctatatatgtactatacaatttccaattccatttaaagcctaaacttaaggtctcaaagttgtaacagagttagtacta |
118 |
Q |
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| T |
2389414 |
gctaaagacaaatcaatgttgctatatatgtactatacaatttccaattccatttaaagcctaaacttaaggtctcaaagttgtaacagagttagtacta |
2389315 |
T |
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| Q |
119 |
ttgctatcttcacaataacttcgtgaatataccaatattatatagtacgttnnnnnnntcaaaacaatcaaaacatgatcatgtggaaacacaatcaatt |
218 |
Q |
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| T |
2389314 |
ttgctatcttcacaataacttcgtgaatataccaatattatatagtacgttaaaaaaatcaaaacaatcaaaacatgatcatgtggaaacacaatcaatt |
2389215 |
T |
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| Q |
219 |
atgtttttgattctctcttaagtttggctcatttagtcaatttcaaagtgtaggtttggatattagttgcttcatttttctagaagcatttggtatcttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2389214 |
atgtttttgattctctcttaagtttggctcatttagtcaatttcaaagtgtaggtttggatattggttgcttcatttttctagaagcatttggtatcttc |
2389115 |
T |
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| Q |
319 |
ttataatggctggtggacagaaaaccaagaggctcagcaattcatgcattcatctca |
375 |
Q |
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| T |
2389114 |
ttataatggctggtggacagaaaaccaagaggctcagcaattcatgcattcttctca |
2389058 |
T |
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