View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_33 (Length: 322)
Name: NF16504_high_33
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_33 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 26 - 310
Target Start/End: Complemental strand, 54618535 - 54618249
Alignment:
| Q |
26 |
aatttgaatgtgtaaaagaaaggagaatggagttaagatgtattgatatgattttatttatattaaggagaagtatacagacaattaatatataggctat |
125 |
Q |
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| T |
54618535 |
aatttgaatgtgtaaaagaaatgagaatgaagttaagatgtattgatatgattttatttatattaaggagaagtatacagacaattaatatataggctat |
54618436 |
T |
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| Q |
126 |
gtacttcag--gaaaaaagaatcttgataagaggcatttggagtaattaagctgattaatccaacgaatgatcacagttttctggtctacatctcgatct |
223 |
Q |
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| T |
54618435 |
gtacttcacaagaaaaaagaatcttgataagaggcatttggagtaattaagctgattaatccaacgaatgatcacagttttctggtctacatctcgatct |
54618336 |
T |
|
| Q |
224 |
ttagattgtttgcttcaacaagacctgcatcaatgtcaaacaacacttttagaatttataatttgtacagtctataatataaatatt |
310 |
Q |
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| T |
54618335 |
ttagattgtttgcttcaacaagacctgcatcaatgtcaaacaacacttttagaatttataatttgtacagtctataatataaatatt |
54618249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8766124 - 8766091
Alignment:
| Q |
1 |
caaaccatgatcacatcaattttcgaatttgaat |
34 |
Q |
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| T |
8766124 |
caaaccatgatcacatcaattttagaatttgaat |
8766091 |
T |
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