View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_36 (Length: 318)
Name: NF16504_high_36
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_36 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 4e-72; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 224530 - 224689
Alignment:
| Q |
21 |
atcgcagtcctgaacgacctaaacgtgtacaacaaacatcccattgctctcc---attgcaattttcgagcttcacaacaacatttcgtttcagatgctt |
117 |
Q |
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| T |
224530 |
atcgcagtcctgaacgacctaaacgtgtacaacaaacatcccattgctctcctccattgcaattttggagcttcacaacaacatttcgtttcagatgctt |
224629 |
T |
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| Q |
118 |
tgatgcaaaatcagcattaatatactgcacaagggagcgagggaggacacatcaatttaa |
177 |
Q |
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| T |
224630 |
tgatgcaaaatcagcattaatatactgcacaagggagcgaggtaggacacatcaatttaa |
224689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 174 - 318
Target Start/End: Original strand, 224717 - 224861
Alignment:
| Q |
174 |
ttaaaaactaaaatcctcactcaccagagttctatacttataggtagaagtaaaagaagggtttaattctgttccttcatcctcacttggtgaatcatca |
273 |
Q |
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| T |
224717 |
ttaaaaactaaaatcctcactcaccagagttctatacttataggtagaagtaaaagaagggtttaattctgttccttcatcctcacttggtgaatcatca |
224816 |
T |
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| Q |
274 |
gcataattgatttcaaccctggaccttttcataggcctaggacac |
318 |
Q |
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| T |
224817 |
gcataattgatttcaaccctggaccttttcgtaggtctaggacac |
224861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 148
Target Start/End: Original strand, 216723 - 216774
Alignment:
| Q |
97 |
aacatttcgtttcagatgctttgatgcaaaatcagcattaatatactgcaca |
148 |
Q |
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| T |
216723 |
aacatttggattcagatgctttgaagcaaaatcagcattaacatactgcaca |
216774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 318
Target Start/End: Original strand, 210345 - 210379
Alignment:
| Q |
284 |
tttcaaccctggaccttttcataggcctaggacac |
318 |
Q |
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|||||||| |||||||||||||||||||||||||| |
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| T |
210345 |
tttcaaccttggaccttttcataggcctaggacac |
210379 |
T |
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