View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_4 (Length: 583)
Name: NF16504_high_4
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 9 - 567
Target Start/End: Original strand, 50089369 - 50089928
Alignment:
| Q |
9 |
gagaagaattagaagtttcacattgcatggaaatgagaaagttgaataacatataagcaagagtagacataagtccaatgtcttaagattttttatttgg |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |||||| |
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| T |
50089369 |
gagaagaattagaagtttcacattgcatggaaatgagaaagttgaataacatatcagcaagagcagacataagcacaatgtcttaagatttttgatttgg |
50089468 |
T |
|
| Q |
109 |
atgtgttgttcaacttatttgtgtgatttctcttatataattctcaatcgtaatatttgttgtttactctgttgttttttaccaataaaaatagagaaaa |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
50089469 |
atgtgttgttcaacttatttgtgtgatttctcttatatgattctcaatcgtaatatttgttgtttactctgttgttttttaccaataaaaaaagaaaaaa |
50089568 |
T |
|
| Q |
209 |
ggaaaattatcattaaacttatcttaaatggttgttcaaataacactacttatttgaaaaatggcttcaccctaaaacatagtagaaaaaagtctaacta |
308 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
50089569 |
ggaaaattatcattaaacttatcttaaacggtcattcaaataacactacttatttgaaaaatggcttcacgctaaaacatagtagaaaaaagtcaaacta |
50089668 |
T |
|
| Q |
309 |
atcccagatttaacaaaattaaaaatggtttctaatatcatcctttaatttggataatatataattgtaaaacttagattacgaaagagattatggaaag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50089669 |
atcccagatttaacaaaattaaaaatggtttctaatatcatcctttaatttggataatatataattgtaaaacttagattacgaaagagattatggaaag |
50089768 |
T |
|
| Q |
409 |
gggtaggtaggttccaaatgttttgtaagaaagtcaactaacataattg-aaatgagacgtgaagcaatacgaagagattggtttgtaacttttcatgaa |
507 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||| || |
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| T |
50089769 |
gggtaggtaggttccaaatgttttgtaagaaagtcaactaacatatttgaaaatgagacgtgaagcaatacgaagagattgatttgtaacttttcaccaa |
50089868 |
T |
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| Q |
508 |
caatatgcgatcaatatctatatgtagcataaaaatatttccagagtcaatatgcaatat |
567 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50089869 |
caatatgcgatcaatatctatatgtagcataaaaatatttccagagtcaatatgcaatat |
50089928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 295644 - 295727
Alignment:
| Q |
175 |
ctctgttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaataacactact |
258 |
Q |
| |
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|||| |||||||| |||||| ||||||||||||| ||||| ||| ||| |||||| |||| |||||||||||||||||||| |
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| T |
295644 |
ctctattgtttttgaccaatgaaaatagagaaaaaataaattgtcacaaaagttatctcaaatagttgttcaaataacactact |
295727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 258
Target Start/End: Original strand, 154388 - 154471
Alignment:
| Q |
175 |
ctctgttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaataacactact |
258 |
Q |
| |
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|||| |||||||| ||||||||||| |||||||| |||| || ||| | | || |||||| |||||||||||||| ||||||| |
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| T |
154388 |
ctctattgtttttgaccaataaaaagagagaaaatgaaagttgtcacaatagttgtcttaattggttgttcaaatatcactact |
154471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 183 - 258
Target Start/End: Original strand, 32713952 - 32714027
Alignment:
| Q |
183 |
ttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaataacactact |
258 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||| ||| ||| |||||| |||| |||||||||||| ||||||| |
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| T |
32713952 |
tttttgaccaataaaaaaagagaaaatgaaaattgtcaccaaaattatctcaaatcgttgttcaaatatcactact |
32714027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 11064062 - 11063979
Alignment:
| Q |
175 |
ctctgttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaataacactact |
258 |
Q |
| |
|
|||| |||||||| ||| ||||||| | |||||| |||| || ||| ||| || ||||||||||||||||||||| ||||||| |
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| T |
11064062 |
ctctattgtttttgaccgataaaaagaaagaaaatgaaagttgtcaccaaagttgtcttaaatggttgttcaaatatcactact |
11063979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 180 - 258
Target Start/End: Complemental strand, 5234439 - 5234361
Alignment:
| Q |
180 |
ttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaataacactact |
258 |
Q |
| |
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|||||||| ||||||||||| |||||||| |||||| ||| ||| || | | ||||||||||||||||| ||||||| |
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| T |
5234439 |
ttgtttttgaccaataaaaagagagaaaaaaaaaattgtcacaaaagttgtatcaaatggttgttcaaatatcactact |
5234361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 180 - 256
Target Start/End: Complemental strand, 30037384 - 30037308
Alignment:
| Q |
180 |
ttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaataacacta |
256 |
Q |
| |
|
|||||||| ||||||||||| ||| |||| ||||||| ||| ||| |||| ||||||| || |||||||| ||||| |
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| T |
30037384 |
ttgtttttgaccaataaaaaaagaaaaaaagaaaattgtcacaaaaattattttaaatgatttttcaaatatcacta |
30037308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 12187049 - 12187119
Alignment:
| Q |
180 |
ttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaata |
250 |
Q |
| |
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|||||||||| |||||||||||||||||| ||||||||||| || || | | ||||||||||||||||| |
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| T |
12187049 |
ttgttttttatcaataaaaatagagaaaatgaaaattatcaaaaatattgtatcaaatggttgttcaaata |
12187119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 10387790 - 10387707
Alignment:
| Q |
175 |
ctctgttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaataacactact |
258 |
Q |
| |
|
||||||||||||| ||||||||||| | |||||| ||||||||| ||| |||||| | ||| |||||||||||||| |||| |
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| T |
10387790 |
ctctgttgtttttgaccaataaaaagatagaaaaaagaaattatcacaaaagttatctcatatgattgttcaaataacattact |
10387707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 259
Target Start/End: Original strand, 2340496 - 2340580
Alignment:
| Q |
175 |
ctctgttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaataacactactt |
259 |
Q |
| |
|
|||| ||||||| ||||||||||| |||||||| ||||||||| | ||| || ||| ||||| ||||| ||||| |||||||| |
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| T |
2340496 |
ctctattgttttcgaccaataaaaagagagaaaaagaaaattattacaaaagttgtctcaaatgattgtttaaatatcactactt |
2340580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 180 - 249
Target Start/End: Complemental strand, 12550259 - 12550190
Alignment:
| Q |
180 |
ttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgttcaaat |
249 |
Q |
| |
|
|||||||| ||||||| ||||||| |||| | ||||| |||| ||| || |||||||||||||||||||| |
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|
| T |
12550259 |
ttgtttttgaccaatacaaatagaaaaaaaggaaattgtcatcaaagttgtcttaaatggttgttcaaat |
12550190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 244
Target Start/End: Complemental strand, 21624472 - 21624408
Alignment:
| Q |
180 |
ttgttttttaccaataaaaatagagaaaaggaaaattatcattaaacttatcttaaatggttgtt |
244 |
Q |
| |
|
||||||||||| |||||||| |||||||| | || |||||| ||| |||||||||||||||||| |
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| T |
21624472 |
ttgttttttactaataaaaaaagagaaaaaggaagttatcacaaaaattatcttaaatggttgtt |
21624408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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