View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_40 (Length: 300)
Name: NF16504_high_40
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 292
Target Start/End: Complemental strand, 45722473 - 45722200
Alignment:
| Q |
19 |
aagattttggatgatggacaagagttgacaatattgacaattgatatgaattctttaatggcttccacacgcatgtaggaataatttatttatatcaaaa |
118 |
Q |
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| T |
45722473 |
aagattttggatgatggacaagagttgacaatattgacaattgatatgaattctttaatggcttccacacgcatgtaggaataat----ttatatcaaaa |
45722378 |
T |
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| Q |
119 |
tagtaaagttgtactcactactagtagattaaaagcaaattatatttgaatattatgagt-----aatggagatcacgttcatttagaatttttattaag |
213 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45722377 |
tagtgaagttgtactcactactagtagattaaaagcaaattatatttgaatattatgagtaatggaatggagatcacgttcatttagaatttttattaag |
45722278 |
T |
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| Q |
214 |
agattgaaacttggagtcacgtactctttacatgagtcaacaaattcctcaaagttacggaacatccttagatattctt |
292 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45722277 |
agattgaaacttggagtcacgtactc-ttacatgagtcaacaaattcctcaaagttacggaacatccttagatattctt |
45722200 |
T |
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