View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_44 (Length: 283)
Name: NF16504_high_44
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_44 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 7 - 267
Target Start/End: Original strand, 36840419 - 36840679
Alignment:
| Q |
7 |
tagataatactgattctcaatatagacgaagcgctgagccgatcttattgcttttacataagcagcatggatgctttggtcaacttttaagttttttcca |
106 |
Q |
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| T |
36840419 |
tagaaaatactgattctcaatataaacgaagcgctgagccgatcttattgcttttacataagcagcatggatgctttggtcaacttttaagttttttcca |
36840518 |
T |
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| Q |
107 |
cataaaagattctgcagaaagttgataataataagagaagttaaacataaagactaattgaattcagtagaaaactagaaatcacaccacaatgcaaatt |
206 |
Q |
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| T |
36840519 |
cataaaagattctgcagaaagttgataataataagagaagttaaacataaagactaattgaattcagtagaaaactagaaatcacaccacaatgcaaatt |
36840618 |
T |
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| Q |
207 |
aagttgatgaaaataatgaagcacttaaggcataagtggacatcacgtacaatcttgttct |
267 |
Q |
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| T |
36840619 |
aagttgatgaaaataatgaagcacttaaggcataagtggacatcacgtacaatcttgttct |
36840679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 140
Target Start/End: Original strand, 36829282 - 36829349
Alignment:
| Q |
73 |
atggatgctttggtcaacttttaagttttttccacataaaagattctgcagaaagttgataataataa |
140 |
Q |
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|||||||||||||||||||||||||| |||| || ||||||||||| |||||||||||||| |||||| |
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| T |
36829282 |
atggatgctttggtcaacttttaagtatttttcatataaaagattcagcagaaagttgatattaataa |
36829349 |
T |
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