View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_46 (Length: 272)
Name: NF16504_high_46
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_46 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 9917513 - 9917266
Alignment:
| Q |
12 |
ataggcaagagatgaaatagattttgctgcaatttttctcttacaaggtggcagtcaagttcaatgtgtttagttctctcgtgaaatgatgaattcgcag |
111 |
Q |
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| T |
9917513 |
ataggcaagagatgaaatagattttgctgcaatttttctcttacaaggtggcagtcaagttcaatgtgtttagttctctcgtgaaatgatgaattcgcag |
9917414 |
T |
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| Q |
112 |
ctatatgtcgggctgattgactatcacagtatagcaaagctgttggtatgtcaggaagcttgaagtcttttaaaagatatgtcaaccactgtaattcaca |
211 |
Q |
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| T |
9917413 |
ctatatgtcgggctgattgactatcacagtatagtaaagttgttggtatgtcaggaagcttgaagtcttttaaaagatatgtcaaccactgtaattcaca |
9917314 |
T |
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| Q |
212 |
gacagtagacgccatcgcacgatattcggcttcagaggagcttcttga |
259 |
Q |
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| T |
9917313 |
gacagtagacgccatcgcacgatattcggctttagaggagcttcttga |
9917266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 21751742 - 21751861
Alignment:
| Q |
23 |
atgaaatagattttgctgcaatttttctcttacaaggtggcagtcaagttcaatgtgtttagttctctcgtgaaatgatgaattcgcagctatatgtcgg |
122 |
Q |
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||||||||| |||||||| |||||||||| || | |||||| || | ||| |||||||| || || || ||||| |||||||| ||||||||||| || |
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| T |
21751742 |
atgaaatagtttttgctgtaatttttctcgcactatgtggcaatctaattcgatgtgttttgtcctttcatgaaaagatgaatttgcagctatatggcgt |
21751841 |
T |
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| Q |
123 |
gctgattgactatcacagta |
142 |
Q |
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| T |
21751842 |
gctgactggctgtcacagta |
21751861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 142
Target Start/End: Complemental strand, 33581793 - 33581674
Alignment:
| Q |
23 |
atgaaatagattttgctgcaatttttctcttacaaggtggcagtcaagttcaatgtgtttagttctctcgtgaaatgatgaattcgcagctatatgtcgg |
122 |
Q |
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||||||||| |||||||| |||||||||| | | | |||||| || | ||| |||||||| || || || ||||| |||||||| ||||||||||| || |
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| T |
33581793 |
atgaaatagtttttgctgtaatttttctcgtcctatgtggcaatctaattcgatgtgttttgtcctttcatgaaaagatgaatttgcagctatatggcgt |
33581694 |
T |
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| Q |
123 |
gctgattgactatcacagta |
142 |
Q |
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||||| || || |||||||| |
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| T |
33581693 |
gctgactggctgtcacagta |
33581674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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