View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16504_high_5 (Length: 567)
Name: NF16504_high_5
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 519; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 519; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Complemental strand, 37054141 - 37053592
Alignment:
| Q |
1 |
gtgcttaagttgagaagatgattatgtaagtgtgttattacttgatatttagattgattgacgatgatattttcaataaatcaagacgagctaccataag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
37054141 |
gtgcttaagttgagaagatgattatgtaagtgtgttattacttgatatttagattgattgacgatgatattttcaataa-tcaagacgagctaccataat |
37054043 |
T |
|
| Q |
101 |
tttaacgaaaactacactttagcgtatattttgtaagttgatgcactaatgatttccaagtccctagaaacctcaagtgtgatttttgcaaagcgagaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37054042 |
tttaacgaaaactacactttagcgtatattttgtaagttgatgcactaatgatttccaagtccctggaaacctcaagtgtgatttttgcaaagcgagaaa |
37053943 |
T |
|
| Q |
201 |
tcctagagttgggcaaacaagcgacacaaacatgaaaacaaaccatgtcatggtgtcaccgtgattttaccaaactaatggataatctaactaaacaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37053942 |
tcctagagttgggcaaacaagcgacacaaacatgaaaacaaaccatgtcatggtgtcaccgtaattttaccaaactaatggataatctaactaaacaatt |
37053843 |
T |
|
| Q |
301 |
agacacattgccaaaaccaaaaggagggtggtcaacaggggacaaagattgtcccaaatcttaaaccatgttcacatgttgtatgctcggttggtagtta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37053842 |
agacacattgccaaaaccaaaaggagggtggtcatcaggggacaaagattgtcccaaatcttaaaccatgttcacatgttgtatgctcggttggtagtta |
37053743 |
T |
|
| Q |
401 |
tccgatgcacgtctttggacatggtaatgaaagtgctcatcaaccgttggatcgttaacaaagtctgttgc-tagtcaagaaaggatccaatcgtagtga |
499 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37053742 |
tccgatgcacgtctttggacatggtaatgaaagtgctcatcaaccgttggatcgttaacaaagtctgttgcttagtcaagaaaggatccaatcgtagtga |
37053643 |
T |
|
| Q |
500 |
cgaaaatggaagttgagagtaacaagcgtttgtggattcaacgtagcaaac |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37053642 |
cgaaaatggaagttgagagtaacaagcgtttgtggattcaacgtagcaaac |
37053592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 37054228 - 37054192
Alignment:
| Q |
223 |
gacacaaacatgaaaacaaaccatgtcatggtgtcac |
259 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
37054228 |
gacacagacatgaaaacaaaccgtgtcatggtgtcac |
37054192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University