View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_52 (Length: 249)
Name: NF16504_high_52
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 32595638 - 32595393
Alignment:
| Q |
1 |
gtccttgttccctatcttctgttcttgtaacatctctttgcctctaaatttgtatttcagtggatgataactacatgttaatttggtacttttgattttg |
100 |
Q |
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| T |
32595638 |
gtccttgttccctatcttctgttcttgtaacatctctttgcctctaaatttgtatttcagtggatgataactacatgttaatttggtacttttgattttg |
32595539 |
T |
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| Q |
101 |
ttaacagaaatgacaaatgaatcctcaacttggaagagtctcttgtgttcattataaacactgctttcatccacaattaataattctctcat-------t |
193 |
Q |
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| T |
32595538 |
ttaacagaaatgacaaatgaatcctcaactt-gaagagtctcttgtgttcattataaacactgctttcttccataattaataattctctcatttgaaaat |
32595440 |
T |
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| Q |
194 |
tgaaagcatcaaaacatacattgaggttaacattacgtgaagtataa |
240 |
Q |
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| T |
32595439 |
tgaaagcatcaaaacatacgttgaggttaacattacgtgaagtataa |
32595393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 5 - 120
Target Start/End: Complemental strand, 32600239 - 32600124
Alignment:
| Q |
5 |
ttgttccctatcttctgttcttgtaacatctctttgcctctaaatttgtatttcagtggatgataactacatgttaatttggtacttttgattttgttaa |
104 |
Q |
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|||||||||||||| || ||||||| |||||||||||||||| |||||| | |||||||||||||| |||| ||| |||||||||| ||| ||||||| |
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| T |
32600239 |
ttgttccctatcttgtggtcttgtattttctctttgcctctaaacttgtatcttagtggatgataacttcatgctaacttggtactttggatcttgttaa |
32600140 |
T |
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| Q |
105 |
cagaaatgacaaatga |
120 |
Q |
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| T |
32600139 |
tagaaatggcaaatga |
32600124 |
T |
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