View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_53 (Length: 249)
Name: NF16504_high_53
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 1570748 - 1570508
Alignment:
| Q |
1 |
taataaaaaatttaagattttaaacatcaagatgaaggggatgcaacaatcaaaggtgaaggtggaggacgtcttgtcctactccttccccgtcttaatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1570748 |
taataaaaaatttaagattttaaacatcaagatgaaggggatgcaataatcaaaggtgaaggtggaggacgtcttgtcctactccttccccgtcttaatc |
1570649 |
T |
|
| Q |
101 |
cagagctagaagaagccggtgaagatgctcttgaaggtgttgaacttgaaacattaactttgtttggttcacttgtcagtgcttgtttgagtagtttatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1570648 |
cagagctagaagaagccggtgaagatgctcttgaaggtgttgaacttgaaacattaactttgtttggttcacttgtcagtgcttgtttgagtagtttatc |
1570549 |
T |
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| Q |
201 |
atcttcacattgtttgtcttctattctatgatgatgatgtc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1570548 |
atcttcacattgtttgtcttctattctatgatgatgatgtc |
1570508 |
T |
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