View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16504_high_56 (Length: 236)

Name: NF16504_high_56
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16504_high_56
NF16504_high_56
[»] chr1 (3 HSPs)
chr1 (1-178)||(43095975-43096160)
chr1 (199-236)||(15470027-15470064)
chr1 (199-236)||(41677295-41677332)
[»] chr3 (2 HSPs)
chr3 (1-178)||(44187643-44187828)
chr3 (200-236)||(45205341-45205377)
[»] chr2 (2 HSPs)
chr2 (45-178)||(32726786-32726928)
chr2 (1-34)||(32726923-32726956)
[»] chr7 (3 HSPs)
chr7 (186-236)||(49069300-49069350)
chr7 (199-231)||(3683595-3683627)
chr7 (200-236)||(46095015-46095051)
[»] chr8 (2 HSPs)
chr8 (182-235)||(6237803-6237856)
chr8 (199-236)||(28756599-28756636)
[»] chr5 (1 HSPs)
chr5 (199-236)||(7287160-7287197)
[»] chr4 (2 HSPs)
chr4 (199-236)||(26732288-26732325)
chr4 (199-236)||(31559602-31559639)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 2e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 43095975 - 43096160
Alignment:
Q  1 tccaaacaatccccattggggatggaattggcttgacagatggatggcttcaaggcaatgggaaagacaaaacactaaagatcaaaagaatcatagatca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||    
T  43095975 tccaaacaatccccattggggatggaattggcttgacagatggatggcttcaaggccatgggaaggacaaaacactaaagatcagaagaatcatagatca 43096074  T
Q  101 gcaaaaggtgttgcaagccatatcat--------gagaaatctccaaattatatgatctaagagatcaaagtcaagatgataaaaa 178  Q
    | |||||||||||||||||||| |||        ||||||||||||||||||||| |||||||||||||| ||||||||| |||||    
T  43096075 ggaaaaggtgttgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaaatcaagatgacaaaaa 43096160  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 15470064 - 15470027
Alignment:
Q  199 cattatatttttatcttctctctctattgttttggttt 236  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  15470064 cattatctttttattttctctctctattgttttggttt 15470027  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 41677332 - 41677295
Alignment:
Q  199 cattatatttttatcttctctctctattgttttggttt 236  Q
    |||||||||||||| || ||||||||||||||||||||    
T  41677332 cattatatttttattttatctctctattgttttggttt 41677295  T

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Target: chr3 (Bit Score: 121; Significance: 4e-62; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 44187828 - 44187643
Alignment:
Q  1 tccaaacaatccccattggggatggaattggcttgacagatggatggcttcaaggcaatgggaaagacaaaacactaaagatcaaaagaatcatagatca 100  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||||||||||||    
T  44187828 tccaaacaatccccattggagatggaattggcttgatagatggatggcttcaaggccatgggaaggacaaaacactaaggatcaaaagaatcatagatca 44187729  T
Q  101 gcaaaaggtgttgcaagccatatcat--------gagaaatctccaaattatatgatctaagagatcaaagtcaagatgataaaaa 178  Q
    |||||||||| ||||||||||| |||        ||||||||||||||||||||| ||||||||||||||| ||||||||||||||    
T  44187728 gcaaaaggtgctgcaagccataccatgtcagttggagaaatctccaaattatatgctctaagagatcaaagccaagatgataaaaa 44187643  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 45205341 - 45205377
Alignment:
Q  200 attatatttttatcttctctctctattgttttggttt 236  Q
    ||||||||||||  |||||||||||||||||||||||    
T  45205341 attatatttttaatttctctctctattgttttggttt 45205377  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 178
Target Start/End: Complemental strand, 32726928 - 32726786
Alignment:
Q  45 tggcttcaaggcaatgggaaagacaaaacactaaagatcaaaagaatcatagatcagcaaaaggtgttgcaagccatatcat--------gagaaatctc 136  Q
    |||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||        ||||||||||    
T  32726928 tggcttcaaggccatgggaaggacaaaacactaaggatcaaaagaatcatagatcagcaaaaggtgctgcaagccataccatgtcagttggagaaatctc 32726829  T
Q  137 caaattatatgatctaagagatc-aaagtcaagatgataaaaa 178  Q
    ||||||||||| ||||||||||| ||||| |||||||||||||    
T  32726828 caaattatatgctctaagagatcaaaagtaaagatgataaaaa 32726786  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32726956 - 32726923
Alignment:
Q  1 tccaaacaatccccattggggatggaattggctt 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  32726956 tccaaacaatccccattggagatggaattggctt 32726923  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 49069300 - 49069350
Alignment:
Q  186 tctctcagatatccattatatttttatcttctctctctattgttttggttt 236  Q
    ||||||| || | |||||| ||||||| |||||||||||||||||||||||    
T  49069300 tctctcatatttacattatgtttttattttctctctctattgttttggttt 49069350  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 199 - 231
Target Start/End: Original strand, 3683595 - 3683627
Alignment:
Q  199 cattatatttttatcttctctctctattgtttt 231  Q
    |||||||||||||| ||||||||||||||||||    
T  3683595 cattatatttttattttctctctctattgtttt 3683627  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 46095015 - 46095051
Alignment:
Q  200 attatatttttatcttctctctctattgttttggttt 236  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  46095015 attatatttttattttctctctctattgtattggttt 46095051  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 235
Target Start/End: Complemental strand, 6237856 - 6237803
Alignment:
Q  182 attttctctcagatatccattatatttttatcttctctctctattgttttggtt 235  Q
    ||||||| ||| || | |||||||||||||| |||||||||||||| |||||||    
T  6237856 attttctttcatatttacattatatttttattttctctctctattgctttggtt 6237803  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 28756599 - 28756636
Alignment:
Q  199 cattatatttttatcttctctctctattgttttggttt 236  Q
    |||||||||||||| || ||||||||||||||||||||    
T  28756599 cattatatttttattttttctctctattgttttggttt 28756636  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Complemental strand, 7287197 - 7287160
Alignment:
Q  199 cattatatttttatcttctctctctattgttttggttt 236  Q
    |||||||||||||  |||||||||||||||||||||||    
T  7287197 cattatatttttactttctctctctattgttttggttt 7287160  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 26732288 - 26732325
Alignment:
Q  199 cattatatttttatcttctctctctattgttttggttt 236  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  26732288 cattatctttttattttctctctctattgttttggttt 26732325  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 199 - 236
Target Start/End: Original strand, 31559602 - 31559639
Alignment:
Q  199 cattatatttttatcttctctctctattgttttggttt 236  Q
    |||||||||||||  |||||||||||||||||||||||    
T  31559602 cattatatttttactttctctctctattgttttggttt 31559639  T

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