View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_high_68 (Length: 205)
Name: NF16504_high_68
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_high_68 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 198
Target Start/End: Original strand, 13658870 - 13659065
Alignment:
| Q |
3 |
aaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatatggctaagttggcatccaagagtgtga |
102 |
Q |
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| T |
13658870 |
aaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatatagctaagttggcatccaagagtgtga |
13658969 |
T |
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| Q |
103 |
gtcctggtggttcctcctacaacagctttcaagatttgcttgagtatataaggtctactaccccataagatgtgaattttgccctttgcttctcct |
198 |
Q |
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| T |
13658970 |
gtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctactagcccataagatgtgaatttttccctttaattctcct |
13659065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 3 - 162
Target Start/End: Original strand, 13648342 - 13648501
Alignment:
| Q |
3 |
aaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatatggctaagttggcatccaagagtgtga |
102 |
Q |
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| T |
13648342 |
aaggttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatatagctaagttggcatccaagagtgtga |
13648441 |
T |
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| Q |
103 |
gtcctggtggttcctcctacaacagctttcaagatttgcttgagtatataaggtctacta |
162 |
Q |
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| T |
13648442 |
gtcctggtggttcctcctacaacaacttccaagatttaattcaatatataaggtctacta |
13648501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 6 - 170
Target Start/End: Original strand, 13653400 - 13653564
Alignment:
| Q |
6 |
gttgtggagaatatggtgaatgatgttatggtgaataggaaggaggagtttgttagatcagcaatggatatggctaagttggcatccaagagtgtgagtc |
105 |
Q |
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| T |
13653400 |
gttgttgagaatatggtgaatgatattatggtgaacaagaaggaggagttttcaaaatctgctactaaaatggcggatttggcttccaagagtgtaaatc |
13653499 |
T |
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| Q |
106 |
ctggtggttcctcctacaacagctttcaagatttgcttgagtatataaggtctactaccccataa |
170 |
Q |
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| T |
13653500 |
ctgatggttcctcctacaacaacctccaagatttgattcagtatataaggtctactagcccataa |
13653564 |
T |
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