View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16504_high_9 (Length: 491)

Name: NF16504_high_9
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16504_high_9
NF16504_high_9
[»] chr5 (5 HSPs)
chr5 (19-475)||(42217272-42217729)
chr5 (21-109)||(42185644-42185732)
chr5 (72-144)||(41846747-41846819)
chr5 (34-106)||(8928401-8928473)
chr5 (45-141)||(16214078-16214174)
[»] chr6 (3 HSPs)
chr6 (47-144)||(430981-431078)
chr6 (31-59)||(29165827-29165855)
chr6 (77-129)||(32392356-32392408)
[»] chr7 (6 HSPs)
chr7 (33-114)||(30900106-30900187)
chr7 (33-129)||(23117338-23117434)
chr7 (73-116)||(2898918-2898961)
chr7 (74-129)||(32612440-32612495)
chr7 (76-129)||(10455091-10455144)
chr7 (72-129)||(28976397-28976454)
[»] chr4 (6 HSPs)
chr4 (31-116)||(39305801-39305886)
chr4 (73-129)||(34581605-34581661)
chr4 (31-114)||(26275534-26275617)
chr4 (33-116)||(30617261-30617343)
chr4 (33-107)||(33714228-33714302)
chr4 (84-116)||(46891321-46891353)
[»] chr8 (2 HSPs)
chr8 (31-107)||(43935150-43935226)
chr8 (84-129)||(42822622-42822667)
[»] chr1 (7 HSPs)
chr1 (75-127)||(7347721-7347773)
chr1 (74-129)||(6025949-6026004)
chr1 (73-144)||(15255182-15255253)
chr1 (75-116)||(17797621-17797662)
chr1 (78-111)||(46937601-46937634)
chr1 (84-116)||(7210627-7210659)
chr1 (73-129)||(7991544-7991600)
[»] chr2 (2 HSPs)
chr2 (36-126)||(11530018-11530108)
chr2 (74-107)||(39597604-39597637)
[»] chr3 (4 HSPs)
chr3 (78-114)||(162934-162970)
chr3 (88-132)||(42141887-42141931)
chr3 (73-129)||(43307606-43307662)
chr3 (73-129)||(51295708-51295764)


Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Complemental strand, 42217729 - 42217272
Alignment:
Q  19 acggtgctactacactattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtggctatagtt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42217729 acggtgctactacactattgcatagtggaatttgaacaaatcactgtcgtccaatgatacgctacttagtacaaaatattgtgaaatagtggctatagtt 42217630  T
Q  119 gcgctatagcaatgctgcctagcagataagcagaatttgaataaactgttacttatggtgatccgcaattgacagcatcggtttatccaaatgtgacctt 218  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  42217629 gcgctatagcattgctgcctagcagataagcagaatttgaataaactgttacttatggtgatccgcaattgacagcatcggtttatccaaacgtgacctt 42217530  T
Q  219 ttgtttgaattttagattgtttgccgcaaacaaaactt-aaaccgtcacattgatttgtggccaaggagatattttatgtcagtcacattgatgagaagc 317  Q
    |||||| ||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42217529 ttgtttaaattttagattgtttgccgcaaataaaacttaaaacagtcacattgatttgtggccaaggagatcttttatgtcagtcacattgatgagaagc 42217430  T
Q  318 caattagactaaaaacttgagttaaaggttctagaatgcattttattatggataattgaaatttgcattttatatctaagattacatttaattactctag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42217429 caattagactaaaaacttgagttaaaggttctagaatgcattttattatggataattgaaatttgcattttatatctaagattacatttaattactctag 42217330  T
Q  418 taattcttgcctgctctaaccggcactccattacatcattcacaatcatgggttctct 475  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  42217329 taattcttgcctgctctaactggcactccattacatcattcacaatcatgggttctct 42217272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 109
Target Start/End: Complemental strand, 42185732 - 42185644
Alignment:
Q  21 ggtgctactacactattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtg 109  Q
    ||||||||||| |||| |||||||||||||||||||| ||||| |  ||||||||||| ||| || |||||||||||||||||| ||||    
T  42185732 ggtgctactacgctatcgcatagtggaatttgaacaattcactcttgtccaatgatactctatttggtacaaaatattgtgaaacagtg 42185644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 72 - 144
Target Start/End: Complemental strand, 41846819 - 41846747
Alignment:
Q  72 atgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagcaatgctgcctagcaga 144  Q
    ||||||||| | |||||||||||||||||||||| ||| ||||||  ||||||||||| |||||| |||||||    
T  41846819 atgatacgccatttagtacaaaatattgtgaaatggtgactatagcggcgctatagcactgctgcatagcaga 41846747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 106
Target Start/End: Complemental strand, 8928473 - 8928401
Alignment:
Q  34 tattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaata 106  Q
    |||||| ||| || ||||||||||||| || |  | | ||||||||||| ||||||||||||||| |||||||    
T  8928473 tattgcgtagcgggatttgaacaaatcgctattgttcgatgatacgctatttagtacaaaatattctgaaata 8928401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 45 - 141
Target Start/End: Complemental strand, 16214174 - 16214078
Alignment:
Q  45 ggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagcaatgctgcctagc 141  Q
    ||||||||||| |||| ||||  | | ||||||||| | |||||||| ||| |||| |||||||| ||||||   |||||||| | |||||||||||    
T  16214174 ggaatttgaactaatcgctgttgttccatgatacgcaatttagtacataatgttgtcaaatagtgactatagcaacgctatagtactgctgcctagc 16214078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 47 - 144
Target Start/End: Original strand, 430981 - 431078
Alignment:
Q  47 aatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagcaatgctgcctagcaga 144  Q
    ||||||||||||||||| |  | | || |||  ||||||||||||||||||||| |||||| |||||||| |||||||||||| || ||| |||||||    
T  430981 aatttgaacaaatcactattgttccattataaactacttagtacaaaatattgttaaatagcggctatagatgcgctatagcactgttgcgtagcaga 431078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 59
Target Start/End: Original strand, 29165827 - 29165855
Alignment:
Q  31 cactattgcatagtggaatttgaacaaat 59  Q
    |||||||||||||||||||||||||||||    
T  29165827 cactattgcatagtggaatttgaacaaat 29165855  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 32392408 - 32392356
Alignment:
Q  77 acgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    |||||| |||||||||| |||||| ||||||  |||||||||||||| |||||    
T  32392408 acgctatttagtacaaagtattgtcaaatagcagctatagttgcgctgtagca 32392356  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 114
Target Start/End: Complemental strand, 30900187 - 30900106
Alignment:
Q  33 ctattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtggctat 114  Q
    ||||||||||| ||||||||||| |||| || |  | ||  ||||| ||| |||||||||||||||||||||||||||||||    
T  30900187 ctattgcatagcggaatttgaacgaatcgctattgttcagcgatacactatttagtacaaaatattgtgaaatagtggctat 30900106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 129
Target Start/End: Complemental strand, 23117434 - 23117338
Alignment:
Q  33 ctattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    |||||| ||||  ||||||||||||||| || |  | | |||||| |||| |||| ||||||| |||||||||||||| |||||  |||||||||||    
T  23117434 ctattgaatagcagaatttgaacaaatcgctatttttccatgatatgctatttagcacaaaatgttgtgaaatagtgggtatagcagcgctatagca 23117338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 116
Target Start/End: Original strand, 2898918 - 2898961
Alignment:
Q  73 tgatacgctacttagtacaaaatattgtgaaatagtggctatag 116  Q
    |||||||||| ||| | |||||||||||||||||||||||||||    
T  2898918 tgatacgctatttaatgcaaaatattgtgaaatagtggctatag 2898961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 32612495 - 32612440
Alignment:
Q  74 gatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    ||||||||| |||||||||||||||||||| ||  |||||| || |||||||||||    
T  32612495 gatacgctatttagtacaaaatattgtgaagtaccggctatggtggcgctatagca 32612440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 129
Target Start/End: Original strand, 10455091 - 10455144
Alignment:
Q  76 tacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    ||||||| |||||||||||| |||| |||| | ||||||||| |||||||||||    
T  10455091 tacgctatttagtacaaaattttgtcaaattgcggctatagtggcgctatagca 10455144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 28976454 - 28976397
Alignment:
Q  72 atgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    ||||||| ||| ||||||||||||||| ||  |||||||||||||| | |||||||||    
T  28976454 atgatacactatttagtacaaaatattttgggatagtggctatagtggtgctatagca 28976397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 116
Target Start/End: Original strand, 39305801 - 39305886
Alignment:
Q  31 cactattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtggctatag 116  Q
    |||||||||||||  ||||||||||| |||||| |  | | | ||| ||||| |||||||| ||||||||||||||||||||||||    
T  39305801 cactattgcatagcagaatttgaacatatcactattgttccacgattcgctatttagtacagaatattgtgaaatagtggctatag 39305886  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 34581605 - 34581661
Alignment:
Q  73 tgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    |||||||||| |||||||||||| |||| |||||| ||||||||| |||||||||||    
T  34581605 tgatacgctatttagtacaaaatgttgtcaaatagcggctatagtagcgctatagca 34581661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 26275617 - 26275534
Alignment:
Q  31 cactattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtggctat 114  Q
    ||||||||||||| || ||||||||||||| || |  | | |  |||||||| |||||||||||||||||||||||| ||||||    
T  26275617 cactattgcatagcgggatttgaacaaatcgctattgttccaaaatacgctatttagtacaaaatattgtgaaatagcggctat 26275534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 116
Target Start/End: Complemental strand, 30617343 - 30617261
Alignment:
Q  33 ctattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtggctatag 116  Q
    ||||||||||| |||||||||||||||| ||    | |  |||||||||| |||||||||||||||||||||||||||| ||||    
T  30617343 ctattgcatagcggaatttgaacaaatcgctagtgttctgtgatacgcta-ttagtacaaaatattgtgaaatagtggcaatag 30617261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Complemental strand, 33714302 - 33714228
Alignment:
Q  33 ctattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatag 107  Q
    |||||| ||||||||||||||||||||| ||||  | | | |||| || | ||||||||||||||||||||||||    
T  33714302 ctattgtatagtggaatttgaacaaatcgctgttgttccacgataagccatttagtacaaaatattgtgaaatag 33714228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 46891353 - 46891321
Alignment:
Q  84 ttagtacaaaatattgtgaaatagtggctatag 116  Q
    |||||||||||||||||||||||| ||||||||    
T  46891353 ttagtacaaaatattgtgaaatagcggctatag 46891321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 107
Target Start/End: Complemental strand, 43935226 - 43935150
Alignment:
Q  31 cactattgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatag 107  Q
    ||||||||||||||||||||||||||||| ||| |  | |  |||||||||  |||| |||||||||||||||||||    
T  43935226 cactattgcatagtggaatttgaacaaatgactattgttccgtgatacgctgtttagcacaaaatattgtgaaatag 43935150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 129
Target Start/End: Original strand, 42822622 - 42822667
Alignment:
Q  84 ttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    |||| |||||||| |||||||||||||||||||  |||||||||||    
T  42822622 ttaggacaaaatactgtgaaatagtggctatagcggcgctatagca 42822667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 127
Target Start/End: Original strand, 7347721 - 7347773
Alignment:
Q  75 atacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatag 127  Q
    |||| ||| |||||||||||||||||||||||| ||||||||  |||||||||    
T  7347721 atacactatttagtacaaaatattgtgaaatagcggctatagaggcgctatag 7347773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 6026004 - 6025949
Alignment:
Q  74 gatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    |||| |||| |||||||||||| |||| |||||||||||||||  |||||||||||    
T  6026004 gatatgctatttagtacaaaatgttgtcaaatagtggctatagcagcgctatagca 6025949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 144
Target Start/End: Complemental strand, 15255253 - 15255182
Alignment:
Q  73 tgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagcaatgctgcctagcaga 144  Q
    ||||| |||| ||||| || |||||||||||| |||||||||||  || ||||||||||| ||| |||||||    
T  15255253 tgatatgctatttagtgcataatattgtgaaacagtggctatagcggcactatagcaatgttgcatagcaga 15255182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 116
Target Start/End: Original strand, 17797621 - 17797662
Alignment:
Q  75 atacgctacttagtacaaaatattgtgaaatagtggctatag 116  Q
    |||||||| |||||| ||||||||||| ||||||||||||||    
T  17797621 atacgctatttagtagaaaatattgtgcaatagtggctatag 17797662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 111
Target Start/End: Original strand, 46937601 - 46937634
Alignment:
Q  78 cgctacttagtacaaaatattgtgaaatagtggc 111  Q
    ||||| ||||||||||||||||||||||||||||    
T  46937601 cgctatttagtacaaaatattgtgaaatagtggc 46937634  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 84 - 116
Target Start/End: Complemental strand, 7210659 - 7210627
Alignment:
Q  84 ttagtacaaaatattgtgaaatagtggctatag 116  Q
    |||||||||||||||||||||||||| ||||||    
T  7210659 ttagtacaaaatattgtgaaatagtgactatag 7210627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 7991544 - 7991600
Alignment:
Q  73 tgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    |||||||| | |||||||| |||||||||||||||  |||| ||| |||||||||||    
T  7991544 tgatacgccatttagtacataatattgtgaaatagcagctagagtggcgctatagca 7991600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 11530018 - 11530108
Alignment:
Q  36 ttgcatagtggaatttgaacaaatcactgtcctccaatgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctata 126  Q
    |||||||| | ||||||||||||||||| |  | |   ||||| ||| |||||||| ||||||||||||||| ||||||||| || |||||    
T  11530018 ttgcatagcgaaatttgaacaaatcactattgttctgcgatacactatttagtacataatattgtgaaatagcggctatagtggcactata 11530108  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 107
Target Start/End: Original strand, 39597604 - 39597637
Alignment:
Q  74 gatacgctacttagtacaaaatattgtgaaatag 107  Q
    ||||||||| ||||||||||||||||||||||||    
T  39597604 gatacgctatttagtacaaaatattgtgaaatag 39597637  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 114
Target Start/End: Original strand, 162934 - 162970
Alignment:
Q  78 cgctacttagtacaaaatattgtgaaatagtggctat 114  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  162934 cgctatttagtacaaaatattgtgaaatagaggctat 162970  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 42141887 - 42141931
Alignment:
Q  88 tacaaaatattgtgaaatagtggctatagttgcgctatagcaatg 132  Q
    |||||||||||||||||||  | |||||||||| |||||||||||    
T  42141887 tacaaaatattgtgaaataacgactatagttgcactatagcaatg 42141931  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 43307662 - 43307606
Alignment:
Q  73 tgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    |||||||||  |||||||||||| |||| | ||||||| |||||| |||||||||||    
T  43307662 tgatacgctgtttagtacaaaatgttgttagatagtggttatagtggcgctatagca 43307606  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 73 - 129
Target Start/End: Original strand, 51295708 - 51295764
Alignment:
Q  73 tgatacgctacttagtacaaaatattgtgaaatagtggctatagttgcgctatagca 129  Q
    |||||||||| |||||||||||| ||||  | ||||||| |||||||| ||||||||    
T  51295708 tgatacgctatttagtacaaaatgttgtcgagtagtggccatagttgctctatagca 51295764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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