View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_1 (Length: 1065)
Name: NF16504_low_1
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 956; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 956; E-Value: 0
Query Start/End: Original strand, 22 - 1054
Target Start/End: Original strand, 40115316 - 40116348
Alignment:
| Q |
22 |
tagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaa |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40115316 |
tagtggcgagtgaagttatgaagctggtggtgggtggctttggaatgtggtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaa |
40115415 |
T |
|
| Q |
122 |
atccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttttgcataaatgtgagacagacaataacttgcaagtgatattcggaaca |
221 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
40115416 |
atccttcaccaaaaaataatcagaaaaaaattcaatggatatagggttagttttgcataaatgtgagacagacaataacttgcaagtgatatttggaaca |
40115515 |
T |
|
| Q |
222 |
tgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagtatgagtaatgggaagtccagtaccatcacctatggtaattt |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40115516 |
tgaagaactttatgaaggtggagagtgcttcttttcaatggtaaaattatcttaccagtatgagtaatgggaagtccagtaccatcacctatggtaattt |
40115615 |
T |
|
| Q |
322 |
tgtctgagccatgatagggagcagtaaggtgaagatcatcaagagtattagtgatgtggtttgtagcgccggaatcaaggatccaatctggctcacccat |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40115616 |
tgtctgagccatgatagggagcagtaaggtgcagatcatcaagagtattagtgatgtggtttgtagcgccggaatcaaggatccaatctggctcacccat |
40115715 |
T |
|
| Q |
422 |
aaaaggagtatgtgtagcagaatgggcagatggacgtggttgatttttggatggataaccatgaagtttgtagcacgttttggcagtgtgtccagatttg |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
40115716 |
aaaaggagtatgtgtagcagaatgggcagatggacgtggttgatttttggatggataaccatgaagtttgtagcacgttttggaagtgtgtccagatttg |
40115815 |
T |
|
| Q |
522 |
tcccagaattgacaagtcgttttcttagactggcctggtgaaacagatctgttgggtgaagagtaattgccatgattaggtgcatagccccgtttggaag |
621 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
40115816 |
tcacagaattgacaagtcgttttcttagactggcctggtgaaacagatctgttgggtgaagagtaatttccatgattaggtgcatagccccgtttggaag |
40115915 |
T |
|
| Q |
622 |
tagcttgtttacctctgtatgcagcatgtgcagtaagtactggagcagattcatcatcacgttgcagaacattttcatagtccacaagtagatcatgaag |
721 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
40115916 |
tagcttgtttacctctgtatgcagcatgtgcagtaagtactggagcagattcatcttcacgttgcagaacattttcatagtccataagtagatcatgaag |
40116015 |
T |
|
| Q |
722 |
ctcagcaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattcagagcatgaataaccaagtcatca |
821 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
40116016 |
ctcaacaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattgagagcatgaataaccaagtcatca |
40116115 |
T |
|
| Q |
822 |
tcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttgtacaagaca |
921 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
40116116 |
tcatcaacaggtttgttgatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttgtacgagaca |
40116215 |
T |
|
| Q |
922 |
ggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagc |
1021 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40116216 |
ggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtatcccaagcttgttgagatgttttcacattgccaagagc |
40116315 |
T |
|
| Q |
1022 |
agttatgatgctctaatcgacaggtgtgatgat |
1054 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |
|
|
| T |
40116316 |
agttatgatgctctgatcgacagatgtgatgat |
40116348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 174
Target Start/End: Original strand, 9007211 - 9007300
Alignment:
| Q |
85 |
tatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggttagttt |
174 |
Q |
| |
|
|||||| |||||| || ||||||||| |||||||||||||||||||||||||| |||||| ||||||||| ||| ||||||||| |
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|
| T |
9007211 |
tatgcagtcctttgaggagaggctcctttgtcttcaaatccttcaccaaaaaacaatcagaaaaaaattcaatggaaatagggttagttt |
9007300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 42360930 - 42361002
Alignment:
| Q |
71 |
gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatca |
143 |
Q |
| |
|
|||||| ||||||||||||| |||||||| |||||| ||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
42360930 |
gtagagcccatccttatgcattccttttataagaggagcccttgtcttcaagtcctttaccaagtaataatca |
42361002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 71 - 241
Target Start/End: Complemental strand, 3017270 - 3017100
Alignment:
| Q |
71 |
gtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcagnnnnnnnttcaatggatataaggtta |
170 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||| |||||| || || ||||| |
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|
| T |
3017270 |
gtagagcccatccttatgcaatccttttagaagaggagcccttgtcttcaagtcctttaccaagtaataatcatgaaagaattcaatagaaattgggtta |
3017171 |
T |
|
| Q |
171 |
gttttgcataaatgtgagacagacaataacttgcaagtgatattcggaacatgaagaactttatgaaggtg |
241 |
Q |
| |
|
|| |||||||| | |||||||| ||||| ||||||| |||| || |||||||| ||||| ||||||| |
|
|
| T |
3017170 |
gtcttgcataagttggagacagataataatttgcaagaaatatgagggacatgaaggactttgggaaggtg |
3017100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 713 - 988
Target Start/End: Complemental strand, 3016628 - 3016353
Alignment:
| Q |
713 |
atcatgaagctcagcaaaggctatgggattctcacgcgtacgaagggcagcagaaacttctttgtactcagatccaagcccattcagagcatgaataacc |
812 |
Q |
| |
|
||||||||| ||| |||| || |||| |||||| || || | |||||| |||| | |||||| |||| || ||||| ||||| |||||||||| || |
|
|
| T |
3016628 |
atcatgaagttcatcaaatgcgatggcattctcccgagttctaagggctgcagcgatctctttgaactcggacccaaggccattgggagcatgaatcacg |
3016529 |
T |
|
| Q |
813 |
aagtcatcatcatcaacaggtttgttaatgacagcaagctcatcagagattgatttaataccttgtaggtattcagaaactgatttggagccctttgttg |
912 |
Q |
| |
|
| ||||||||||||| ||| ||||| |||| ||||| |||||||| |||| ||| || |||| ||||||||||| || |||||||| || || | | |
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|
| T |
3016528 |
agatcatcatcatcaataggcttgttgatgattgcaagttcatcagaaattgctttgatggcttggaggtattcagagacggatttggaacctttagagg |
3016429 |
T |
|
| Q |
913 |
tacaagacaggcgctccttaagatgcataatgcgtgatctagtcttgctagcaaacattttcttgagggtatccca |
988 |
Q |
| |
|
| | || | ||||| ||||||||||||||||| | ||| || ||||| ||||||||||| || ||| ||||||| |
|
|
| T |
3016428 |
ttcgagttaaccgctctttaagatgcataatgcgagctcttgttttgcttgcaaacattttgttaaggatatccca |
3016353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 144
Target Start/End: Original strand, 9038424 - 9038459
Alignment:
| Q |
109 |
cccttgtcttcaaatccttcaccaaaaaataatcag |
144 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |
|
|
| T |
9038424 |
cccttgtcttcaaatccttcaccaaaaaaaaatcag |
9038459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 144
Target Start/End: Original strand, 3703285 - 3703363
Alignment:
| Q |
66 |
atgtggtagagaccatccttatgcaatccttttagaagaggctcccttgtcttcaaatccttcaccaaaaaataatcag |
144 |
Q |
| |
|
||||||||||| |||| |||||| |||| |||||| ||| ||||||||||||||||||| | ||||||| |||||| |
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|
| T |
3703285 |
atgtggtagagtccattgttatgccgtcctcttagaatgggcacccttgtcttcaaatccttaatcaaaaaacaatcag |
3703363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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