View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_10 (Length: 508)
Name: NF16504_low_10
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 8 - 492
Target Start/End: Complemental strand, 38385855 - 38385370
Alignment:
| Q |
8 |
aagcaaaggcgtgaacatgatgaaaatatagtcgctttgcctgtgcagttggcaaattgcaatgtttgcgtagaggaaaacaaacactgcaattgtgatc |
107 |
Q |
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| T |
38385855 |
aagcaaaggcgtgaacatgatgaaaatatagtcgctttgcctgtgcagttggcaaattgcaatgtttgcgtagaggaaaacagacactgcaattgtgatc |
38385756 |
T |
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| Q |
108 |
tcaccattgctgaggatagaaataacactactactgcagaaggcgtcaatgtcgatgtggaacatgattctaatgctgatagttcttttgctcatgctgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38385755 |
acaccattgctgaggatagaaataacactactactgcagaaggcgtcaatgtcgacgtggaacatgattctaatgctgatagttcttttgctcatgctgt |
38385656 |
T |
|
| Q |
208 |
tatcaacatggtgggaatgctcataggtaaattttgcatattgcttcttatttgtgattccttgtgttgcaagaaactcaaaaaatggtttgtaaatata |
307 |
Q |
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| T |
38385655 |
tatcaacatggtgggaatgctcataggtaaattttgcatattgcttcttatttgtgattccttgtgttgcaagaaactcaaaaaatggtttgtaaatata |
38385556 |
T |
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| Q |
308 |
gaaaacatgtgttggctgggaactgatcttc-ttcgtgtgataatttttaccggaaggtgtcgagaggaaatttccacccttcaattctctcttaacgac |
406 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
38385555 |
gaaaacatgtgttggctgggaactgatcttctttcgtgtgataatttttaccggaaggtgtccagaggaaatttccacccttcaattctctcttaacgac |
38385456 |
T |
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| Q |
407 |
tttgacggcatgcagtagaaataaataaatgattgagatttcactgcataaaactttcatatgaaatgatatgttctaggtgtttt |
492 |
Q |
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| T |
38385455 |
tttgacggcatgcagtagaaataaataaatgattgagatttcactgcataaaactttcatatgaaatgatatgttctaggtgtttt |
38385370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 29439074 - 29438979
Alignment:
| Q |
8 |
aagcaaaggcgtgaacatgatgaaaatatagtcgctttgcctgtgcagttggcaaattgcaatgtttgcgtagaggaaaacaaacactgcaattgt |
103 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29439074 |
aagcaaagacgtgaacatgatgaaaatatagtcgctttgcctgtgcagttggcaaattgcaatgtttgcgtagaggaaaacaaacactgcaattgt |
29438979 |
T |
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