View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_11 (Length: 505)
Name: NF16504_low_11
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 475; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 12 - 486
Target Start/End: Original strand, 33767814 - 33768288
Alignment:
| Q |
12 |
gcaaaggcagtcactataaaggcacttcattcctgtttgggagaggagcatccttaacttgaaaagctacaatcgatctttcttttcttaatcttgaaac |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33767814 |
gcaaaggcagtcactataaaggcacttcattcctgtttgggagaggagcatccttaacttgaaaagctacaatcgatctttcttttcttaatcttgaaac |
33767913 |
T |
|
| Q |
112 |
ccttttttaagtgattccaatttaattatcttgcttttccaatccaacatcataaccaagttccatttcctcattttcctttatctgagcatacttataa |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33767914 |
ccttttttaagtgattccaatttaattatcttgcttttccaatccaacatcataaccaagttccatttcctcattttcctttatctgagcatacttataa |
33768013 |
T |
|
| Q |
212 |
accttctcattaaacaccacctgaggatccttatgaatcaaaaccccattccgatcatacccctctttcaaaaacacaacccaattcatctcagtccccg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768014 |
accttctcattaaacaccacctgaggatccttatgaatcaaaaccccattccgatcatacccctctttcaaaaacacaacccaattcatctcagtccccg |
33768113 |
T |
|
| Q |
312 |
ccaaataaaacgccctcggctgcttaaccaacatatgataagtatgcttagtcaaactaaactcctccttaaactcaacaagatgatgaattgaagctct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768114 |
ccaaataaaacgccctcggctgcttaaccaacatatgataagtatgcttagtcaaactaaactcctccttaaactcaacaagatgatgaattgaagctct |
33768213 |
T |
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| Q |
412 |
cttctccaatgtcaaactcaaaaactcatgaatcaatccaaccctatacttctcagcttccaatgtccacacatc |
486 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33768214 |
cttctccaatgtcaaactcaaaaactcatgaatcaatccaaccctatacttctcagcttccaatgtccacacatc |
33768288 |
T |
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