View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_12 (Length: 495)
Name: NF16504_low_12
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 2353028 - 2353505
Alignment:
| Q |
1 |
tgcacatgatgactttaatctgtggtgtaaaacatatgttttgcaatgagagattgcatagatttgtctcaatgaacaaagaaaaagacgtatgtgtcga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2353028 |
tgcacatgatgactttaatctgtggtgtaaaacatatgttttgcaatgagagattgcatagatttgtctcaatgaacaaagaaaaagacgtatgtgtcga |
2353127 |
T |
|
| Q |
101 |
gattgtaaaaagcatgtttgctaagtgtgtggatcatggtccatgcatgcaggatgaggtgtacaactgcgttcatggatggtattgaatgtatatatca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2353128 |
gattgtaaaaagcatgtttgctaagtgtgtggatcatggtccatgcatgcaggatgaggtgtacaactgcgttcatggatggtattgaatgtatatatca |
2353227 |
T |
|
| Q |
201 |
cctatatggaggttattactacataaactcagatatttgtgtggtgttgagtccccatcagcggaacatatctttgcatagagtannnnnnnngcctaga |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2353228 |
cctatatggaggttattactacataaactgagatatttgtgtggtgctgagtccccatcagcggaacatatctttgcatagagtattttttttgcctaga |
2353327 |
T |
|
| Q |
301 |
gaacctaatgaaagctatcttccaacaggtgttttcactaaaatttgagtaatgcatggaaccaattatctcttatattaggaatctttgaagtactgca |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2353328 |
gaacctaatgaaagctatcttccaacaggtgttttcactaaaatttgagtaatgcatggaaccaattatctcttatattaggaatctttgaagtagtgca |
2353427 |
T |
|
| Q |
401 |
tgaaagctatttcttttttccttaattaaaaatccttaaagagtatgtttaggttttgcttgcgagtttggagggaaa |
478 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2353428 |
tgaaagctatttcttttttccttaattaaaaattcttaaagagtatgtttaagttttgcttgcgagtttggagggaaa |
2353505 |
T |
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