View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_15 (Length: 470)
Name: NF16504_low_15
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 265 - 455
Target Start/End: Original strand, 40827917 - 40828107
Alignment:
| Q |
265 |
gacatcacatattaatgccttacacgtgatgatgatggttgttaatgatatacttctaattatgtagcagctagctctaccctctaacgatctaattctg |
364 |
Q |
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| T |
40827917 |
gacatcacatattaatgccttacacgtgatgatgatggttgttaatgatatacttctaattatgtagcagctagctctaccctctaacgatctaattctg |
40828016 |
T |
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| Q |
365 |
gaaactcacctattttctttatagataataagttacattctacgtattaatgtctttcacatcacatattactcaaaaatagtgtaaagtt |
455 |
Q |
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| T |
40828017 |
gaaactcacctattttctttatagataataagttacattctacgtattaatgtctttcacatcacatattactcaaaaatagtgtaaagtt |
40828107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 40827664 - 40827846
Alignment:
| Q |
12 |
agcataggggtggaacaatgcacatgatgatgaatgtccattgctagctctagtgtccaattatctacttctggaaactcaaaccctagtttcttaaaat |
111 |
Q |
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| T |
40827664 |
agcaaaggggtggaacaatgcacatgatgatgaatgtccattgctagctctagtgtccaattatctacttctggaaactcaaaccctagtttcttaaaat |
40827763 |
T |
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| Q |
112 |
aaaaatcttgaaaagaatatatatttactcaaaatgctgcctatactagagttccaagttaaaatgaaaaatgctacctacaa |
194 |
Q |
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| T |
40827764 |
aaaaatcatgaaaagaatatatatttactcaaaatgctgcctatactagagatccaagttaaaatgaaaaatgctacctacaa |
40827846 |
T |
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