View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16504_low_16 (Length: 468)
Name: NF16504_low_16
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_16 |
 | |
|
| [»] scaffold0391 (2 HSPs) |
| | |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 33952040 - 33952480
Alignment:
| Q |
13 |
aaaatagttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttactttcttacatatgagcgttatctattatgtagcatcgacacgctt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
33952040 |
aaaatagttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttactttctaacatatgagcgttatctattatgtagcattgacacgctt |
33952139 |
T |
|
| Q |
113 |
cagattgatgtcaaatagaaagacgcctaagttataatcatttgattactgacaaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtt |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33952140 |
cagattgatgtcaaatagaaagaagcctaagttataatcatttgattactgaccaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtt |
33952239 |
T |
|
| Q |
213 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatagggaaagaactatcacaaggtcattctattct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33952240 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatagggaaagaactatcacaaggtcattctattct |
33952339 |
T |
|
| Q |
313 |
tgattctaatactgatttacttactcgcctccaaaagatcttcgatgttttagaagataatcccacaatcatggagtgcttcatggacatagccttattt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33952340 |
tgattctaatactgatttacttactcgcctccaaaagatcttcgatgttttagaagataatcccacaatcatggagtgcttcatggacatagccttattt |
33952439 |
T |
|
| Q |
413 |
cccgaagaccatagaattcctgtcgctgctctcgttgatat |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33952440 |
cccgaagaccatagaattcctgtcgctgctctcgttgatat |
33952480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 33974641 - 33975080
Alignment:
| Q |
13 |
aaaatagttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttactttcttacatatgagcgttatctattatgtagcatcgacacgctt |
112 |
Q |
| |
|
|||| ||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33974641 |
aaaacagttcagatattatcgacaaaaatcttgtagaaaaggtacttgttcttactttcttacatatgagcgttatctattatgtagcatcgacacactt |
33974740 |
T |
|
| Q |
113 |
cagattgatgtcaaatagaaagacgcctaagttataatcatttgattactgacaaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtt |
212 |
Q |
| |
|
|||||||| |||| ||||||||||||||| ||||||||||||||||||||||| | | | |||||||||||||||||||| ||||||||||| | |||| |
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|
| T |
33974741 |
cagattgaagtcacatagaaagacgccta-gttataatcatttgattactgaccatactcgcttgcaatgaattgcaggtcgttagaagttgcaatggtt |
33974839 |
T |
|
| Q |
213 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatagggaaagaactatcacaaggtcattctattct |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||| ||| |||||||||||||||||||| ||||| |
|
|
| T |
33974840 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcatgacttgtggcataagatagtgaaggaactatcacaaggtcattcaattct |
33974939 |
T |
|
| Q |
313 |
tgattctaatactgatttacttactcgcctccaaaagatcttcgatgttttagaagataatcccacaatcatggagtgcttcatggacatagccttattt |
412 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||| ||||||||||| |
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|
| T |
33974940 |
tgattctaataccgaattacttactcgcctccaaaagatcttcgatgttttggaagataatccaaaaatcatggagtgcttcatggacctagccttattt |
33975039 |
T |
|
| Q |
413 |
cccgaagaccatagaattcctgtcgctgctctcgttgatat |
453 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33975040 |
cccgaagaccatagaattcctgtcgctgctctcgttgatat |
33975080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 13 - 453
Target Start/End: Original strand, 33991560 - 33992000
Alignment:
| Q |
13 |
aaaatagttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttactttcttacatatgagcgttatctattatgtagcatcgacacgctt |
112 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
33991560 |
aaaatagttcagatattatcgacaaaaatcttgtcgaaaaggtacttgttcttactttcttgcatatgagcgttatctattatgtagcatcgacacactt |
33991659 |
T |
|
| Q |
113 |
cagattgatgtcaaatagaaagacgcctaagttataatcatttgattactgacaaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtt |
212 |
Q |
| |
|
|||||||| |||| ||||||||| ||||| |||| ||||||||||||| |||| | |||| ||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
33991660 |
cagattgaagtcacatagaaagatgcctatgttaaaatcatttgattattgaccatatttacttgcaatgaattgcaggtcgttagaagttgcaaaggtt |
33991759 |
T |
|
| Q |
213 |
taccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatagggaaagaactatcacaaggtcattctattct |
312 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||||||| |||| ||||||| ||||||| || ||| | |||||||||||||||||||| |
|
|
| T |
33991760 |
taccgcttaccattaaagtgattgctacatcactcagaaatcggcccgatgacttgtggcgtaagatagtgatggaattgtcacaaggtcattctattct |
33991859 |
T |
|
| Q |
313 |
tgattctaatactgatttacttactcgcctccaaaagatcttcgatgttttagaagataatcccacaatcatggagtgcttcatggacatagccttattt |
412 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991860 |
tgattctaataccgaattacttactcgcctccaaaagatctttgatgttttggaagataatcctacaatcatggagtgcttcatggacatagccttattt |
33991959 |
T |
|
| Q |
413 |
cccgaagaccatagaattcctgtcgctgctctcgttgatat |
453 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33991960 |
cctgaagaccatagaattcctgtcgctgctctcgttgatat |
33992000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 249 - 453
Target Start/End: Original strand, 33959576 - 33959780
Alignment:
| Q |
249 |
aaaatcggcctcgtgacatgtggcgaaagatagggaaagaactatcacaaggtcattctattcttgattctaatactgatttacttactcgcctccaaaa |
348 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| | ||||||| |||||||||||| |
|
|
| T |
33959576 |
aaaatcggcctcgtgacttgtggcgaaagatagggaaagaactagcacaaggtcattctcttcttgattctaataccaaattacttattcgcctccaaaa |
33959675 |
T |
|
| Q |
349 |
gatcttcgatgttttagaagataatcccacaatcatggagtgcttcatggacatagccttatttcccgaagaccatagaattcctgtcgctgctctcgtt |
448 |
Q |
| |
|
|||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33959676 |
gatctttgatgttttggaagataatcctacaatcatggagtgcttcatggacatagccttatttcccgaagaccatagaattcctgtcgctgctctcgtt |
33959775 |
T |
|
| Q |
449 |
gatat |
453 |
Q |
| |
|
||||| |
|
|
| T |
33959776 |
gatat |
33959780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 207 - 453
Target Start/End: Original strand, 33912901 - 33913147
Alignment:
| Q |
207 |
aaggtttaccgcttaccattaaagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatagggaaagaactatcacaaggtcattc |
306 |
Q |
| |
|
|||||||||| ||| |||||||||| ||||| |||||||||| ||||| | |||| ||||| |||||| | ||| ||||| || ||||||| ||| |
|
|
| T |
33912901 |
aaggtttacctcttgccattaaagtgattgcaacatcactcactaatcgttcatatgacttgtgggaaaagattgtgaaggaactttctcaaggtcgttc |
33913000 |
T |
|
| Q |
307 |
tattcttgattctaatactgatttacttactcgcctccaaaagatcttcgatgttttagaagataatcccacaatcatggagtgcttcatggacatagcc |
406 |
Q |
| |
|
||| |||||||||| |||||| |||||||||||||||| |||| |||| |||||||| ||||||||| | | | || |||||||||||||||| | || |
|
|
| T |
33913001 |
tatacttgattctagtactgaattacttactcgcctccgaaaggtcttggatgttttggaagataatgctattaacaaggagtgcttcatggaccttgca |
33913100 |
T |
|
| Q |
407 |
ttatttcccgaagaccatagaattcctgtcgctgctctcgttgatat |
453 |
Q |
| |
|
||||| || ||||||| |||||||| || |||||||| ||||||| |
|
|
| T |
33913101 |
ttattccctgaagacctgagaattcccgtttctgctctcattgatat |
33913147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 287 - 441
Target Start/End: Original strand, 33941720 - 33941874
Alignment:
| Q |
287 |
gaactatcacaaggtcattctattcttgattctaatactgatttacttactcgcctccaaaagatcttcgatgttttagaagataatcccacaatcatgg |
386 |
Q |
| |
|
||||| |||| ||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||| || |||||||| ||||||||| ||| | || | |
|
|
| T |
33941720 |
gaactttcacgaggtcgttctatacttgattctaatactgaattacttattcgcctccaaaagattttggatgttttggaagataatgccattagcaaag |
33941819 |
T |
|
| Q |
387 |
agtgcttcatggacatagccttatttcccgaagaccatagaattcctgtcgctgc |
441 |
Q |
| |
|
|||||||||||||| | || |||||||| ||||| || ||||||||||| ||||| |
|
|
| T |
33941820 |
agtgcttcatggaccttgcattatttcctgaagatcagagaattcctgttgctgc |
33941874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 158 - 444
Target Start/End: Original strand, 11776 - 12062
Alignment:
| Q |
158 |
ttactgacaaaatttgcttgcaatgaattgcaggttgttagaagttgtcaaggtttaccgcttaccattaaagtaattgctacatcactcaaaaatcggc |
257 |
Q |
| |
|
|||||||| | ||||||||||| | || |||||||||| |||||||| |||||||||||||||| ||| |||| |||||||||||||||| |||||| | |
|
|
| T |
11776 |
ttactgaccatatttgcttgcactcaaatgcaggttgtaagaagttgcaaaggtttaccgcttacgattgaagtgattgctacatcactcagaaatcgac |
11875 |
T |
|
| Q |
258 |
ctcgtgacatgtggcgaaagatagggaaagaactatcacaaggtcattctattcttgattctaatactgatttacttactcgcctccaaaagatcttcga |
357 |
Q |
| |
|
|| |||| ||||| |||||||| ||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
11876 |
cttatgacttgtggacaaagatagtgaaggaactgtcacaaggtcattctatacttgattctaatactgagttacttactcgcctccaaaagatctttga |
11975 |
T |
|
| Q |
358 |
tgttttagaagataatcccacaatcatggagtgcttcatggacatagccttatttcccgaagaccatagaattcctgtcgctgctct |
444 |
Q |
| |
|
|||||| |||||||||| || ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11976 |
tgttttcgaagataatctcataatcaaggagtgcttcatggacctagccttatttcccgaagaccatagaattcctgttgctgctct |
12062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 11704 - 11752
Alignment:
| Q |
19 |
gttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttac |
67 |
Q |
| |
|
||||||||| ||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
11704 |
gttcagatactatcaacaaagatcttgtggaaaaggtacttgttcttac |
11752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 5e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 228 - 449
Target Start/End: Complemental strand, 8278498 - 8278271
Alignment:
| Q |
228 |
aagtaattgctacatcactcaaaaatcggcctcgtgacatgtggcgaaagatagggaaagaactatcacaaggtcattctattcttgattctaatactga |
327 |
Q |
| |
|
|||| ||||| |||||||| | || |||||| |||| ||||||| ||||||| || ||||| |||| ||||| |||| |||||||||||||||| || |
|
|
| T |
8278498 |
aagtgattgcgacatcactaagaagtcggccagatgacttgtggcgtaagatagtgacggaactgtcacgaggtc-ttctgttcttgattctaataccga |
8278400 |
T |
|
| Q |
328 |
tttacttactcgcctccaaaagatcttcgatgttttagaagataatcccacaat-------catggagtgcttcatggacatagccttatttcccgaaga |
420 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
8278399 |
attacttactcgcctccaaaagatattcgatgttttagaagataatcccacaatcatgattcatgaagtgcttcatggacatagccttatttcctgaagc |
8278300 |
T |
|
| Q |
421 |
ccatagaattcctgtcgctgctctcgttg |
449 |
Q |
| |
|
||||||||||| ||||||||||||||||| |
|
|
| T |
8278299 |
ccatagaattcatgtcgctgctctcgttg |
8278271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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