View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16504_low_17 (Length: 467)
Name: NF16504_low_17
Description: NF16504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16504_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 40470118 - 40470576
Alignment:
| Q |
1 |
aaacaaaattgagattaaagaaaaagatactagtatcaccactagtcatttgaataaaaactctaacttattgatgtggagtccacataaaatgtgtcgt |
100 |
Q |
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||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40470118 |
aaacaaaattgagattaaagaaaaagatactaggatcac---tagtcatttgaataaaaactctaacttattgatgtggcgtccacataaaatgtgtcgt |
40470214 |
T |
|
| Q |
101 |
atcatactctctaacaattgaacttaatggatacatcttttgattgtcatgttataatttcagggacaaaattgctaatttctaaaagttacagatggtt |
200 |
Q |
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| T |
40470215 |
atcatactctctaacaattgaacttaacggataaatcttttgattgtcatgttataatttcagggacaaaattgctaatttgtaaaagttacagatggtt |
40470314 |
T |
|
| Q |
201 |
acaatttcaggtacaaagtttcctacatactcgatattttgggccgatgcatagcagaatttagaaccttgcgttataagtaatcttgaaacaactcgtt |
300 |
Q |
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| T |
40470315 |
acaatttcaggtacaaaatttcctacatactcgatattttgggccgatgcatagcagaatttagaaccttgcgttataagtaatcttgaaacaactcatt |
40470414 |
T |
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| Q |
301 |
ttaaaagttactttgaagaagaaaagtataaacctgggatatggatttcccttcaccaccttctgcccatatttcctccagcgaaagccatctccaagta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
40470415 |
ttaaaagttactttgaagaagaaaagtataaacctgggatatggatttcccttcaccaccttctgcccatatttcctccagcgaaagccatctccaagga |
40470514 |
T |
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| Q |
401 |
cttcagaatccacagaactttgcataacaatgtgtggctctactaaaccttcctatgatact |
462 |
Q |
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| T |
40470515 |
cttcagaatccacagaactttgcataacaatgtgtggctctactaaaccttcctctgatact |
40470576 |
T |
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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 26966153 - 26966201
Alignment:
| Q |
332 |
acctgggatatggatttcccttcaccaccttctgcccatatttcctcca |
380 |
Q |
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|||| |||| |||||||||||| || || |||||||||||||||||||| |
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| T |
26966153 |
accttggatttggatttccctttactactttctgcccatatttcctcca |
26966201 |
T |
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